KEGG   Rhodococcus fascians D188: A3L23_00102
Entry
A3L23_00102       CDS       T04328                                 
Symbol
deaD_1
Name
(GenBank) ATP-dependent RNA helicase DeaD
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.13 5.6.2.4]
Organism
rfa  Rhodococcus fascians D188
Brite
KEGG Orthology (KO) [BR:rfa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rfa03400]
    A3L23_00102 (deaD_1)
Enzymes [BR:rfa01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     A3L23_00102 (deaD_1)
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     A3L23_00102 (deaD_1)
DNA repair and recombination proteins [BR:rfa03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    A3L23_00102 (deaD_1)
SSDB
Motif
Pfam: DEAD_assoc DEAD Helicase_C ResIII AlkZ-like Lhr_WH DUF6406 AAA_25 AAA_22 GntR
Other DBs
NCBI-ProteinID: AMY51463
UniProt: A0A165KW46
LinkDB
Position
103823..108364
AA seq 1513 aa
MATHSIGTDIMEKLSRPTREWFNGAFPAPTSAQLGAWSSISSGSHTLVVAPTGSGKTLSA
FLWALDELAQLGADSTRKTKVLYISPLKALAVDVERNLRAPLVGITQTAKRLGLNPPEIS
VGVRSGDTSAADRRTMIKTPPDILITTPESLFLMLTSAARDILAEVDTVIVDEVHAVAGT
KRGAHLAVSLERLDAMLDKPAQRIGLSATVRPHEEVGRFLAGAAPIEIVAPPAPKTFDLT
VQVPVEDMTELGVTDPNADTSAAPPAQGSIWPHVEEKMVDLILEHKSCIVFANSRRLAER
LTARLNEVYAERIGGGVDTEHKPPSQVGTASDVNHGADPLLARAHHGSVSKDQRALIEDD
LKTGRLRCVVATSSLELGIDMGAVDLVVQVEAPPSVASGLQRVGRAGHQVGEISKGVLFP
KHRTDLIHCAVTVERMTSGKIEALFVPANPLDVLAQQTVAACALEPIDAEDWFESVRRTG
SFATLPRSAYESTLDLLSGRYPSDEFAELRPRLVWDRDANTLTGRPGSQRLAVTSGGTIP
DRGLFTVYMVGEKQSRVGELDEEMVYESRVGDVFALGATSWRIEEITHDRVLVSPAYGQP
GRLPFWHGDGLGRPAELGRALGEFLRSTTDRSNLAERLSTDGLDANAVNNLIALLDEQLE
ATGQLPTDKTMIVERFRDELGDWRLVLHSTYGQQVHAPWALAVGARLIERYGIDAAPTAS
DDGIIVRLPDTDDQPPGAELFVFERDEIADIVTEQVGGSALFASRFRECAARALLLPRRN
PGKRAPLWQQRQRSAQLLDVARKYPTFPILLETVRECLQDVYDLPALEDILARIGRRQIR
IVDVETPSPSPFANSLLFNYVGAFMYEGDSPLAERRAAALSLDSALLAELLGRVELRELL
DDSVITTTELELQRLPEDRHAKDIEGVADLLRLLGPLTATEVGERTNGDEFPQWLAELAD
AKRAMEVSFAGQNWWTAIEDAARLRDALGVPLPIGTPAAFIEPVDDPLVDLISRYARTHG
PFTLDDAAARFGVGTAVVRDVLRRLAVDKRVVEGEFRPGATGSEWCDAEVLRRLRRRSLA
AARQEVEPVSTATLGRFLPAWQHVDSRRLSGIDGVATVIEQLAGVPVPASAWESLVLASR
VSDYSPAMLDELTSTGEVLWAGHGAISSKDGWVSLHMADTAPLTLVPAAESDLSELQIRI
QDAVAGGGAYFFRQLSDTVGSTDDTALQAALWELVWAGRLSNDTFAPLRALLNSTATRSA
PSHRAPRRTPRLRSYRQFERPSLPTRTGPPTAGGRWSRLPELEPDLTVRAHATADVLLER
YGVVTRGSVMNEGVPGGFATMYKVLTGFEDSGRCRRGYFVDSLGGAQFSTSDVVDRLRSY
DEPKKNATAVVLASCDPANPYGGALPWPKAGGEDTDDTTKHRPGRKAGALVVLVRGELTM
FVERGGKSVLTFGDNTEDIASAATALATTVKRGGVDKLLVERINGHDIHGTDFSKTLTAA
GFSATPRGLRLRR
NT seq 4542 nt   +upstreamnt  +downstreamnt
atggccacgcacagtatcggcaccgacatcatggagaagctgtcgcggccgactcgcgag
tggttcaacggcgcatttccggctcccacgtcggcgcagctcggtgcgtggtcgtccatt
tccagcggatcgcacaccctggtggtcgcgccgaccggctcgggcaaaactctatcggcg
ttcctgtgggccctcgacgagctggcccagctgggtgcggacagcacccgcaagaccaag
gtgctctacatatcgccgctcaaggctctggcagtggacgtcgagcgcaacctgcgagct
ccgttggtcggcatcacccagacagccaagcgtctcggtctgaacccgccggagatttcc
gtcggagtccgctcgggcgacaccagcgctgccgatcgccggaccatgatcaagactccg
ccggacattctgatcaccactcccgagtctctgttcctcatgctcacctctgcggcgcgg
gacatcctggccgaggtcgatacggtgatcgtcgacgaggtgcacgccgtggcaggcacg
aagcgtggcgcgcacctcgcggtgtccctcgagcggctcgacgcgatgctggacaagccc
gcgcaacgcatcggcctgtccgcgacggtgcgcccccacgaggaagtgggccgattcctc
gccggtgccgcccccatcgagatcgtcgccccacccgcaccgaagactttcgacctgacg
gttcaggtgcccgtggaggacatgaccgaactcggcgtcaccgacccgaatgcggacacc
tccgccgctcccccggctcagggatcgatctggccgcacgtcgaggagaagatggtcgat
ctcatcctcgagcacaaatcgtgcatcgtcttcgccaactcgcgccggctcgcggaacga
ctcaccgcgcggctcaacgaggtgtacgccgaacgtatcggcggcggagtcgataccgag
cacaaaccaccatctcaggtgggcaccgcatccgacgtcaaccacggcgccgatcctctg
ctggcacgggcccaccacggcagtgtcagcaaggatcagcgcgcgctgatcgaagacgat
ctgaagaccggtcgtctgcgctgcgttgtggccaccagcagtctggagctcggaatcgac
atgggcgcagtcgatctggtggtccaggtcgaggcgccgccgtcggtggccagtggtctg
cagcgcgtcggtcgcgccggccaccaggtgggcgagatctccaagggcgtgctgttcccc
aagcaccgcaccgatctcatccattgcgcggtcaccgtcgaacgcatgacgtcgggcaag
atcgaggccctcttcgtcccggccaatcccctcgatgtcctcgcccagcaaaccgtcgca
gcgtgcgcactcgaacccatcgacgccgaggattggttcgaatcagtccgtcgcaccggc
agtttcgccactctgcccagatctgcctacgagtcgacactcgacctgctctcgggccgt
tacccgtcggacgagttcgccgaactacggccacggctcgtgtgggaccgcgacgccaac
actctcaccggccgtcccgggtcgcagcgactggccgtcacgtccggcggaaccatcccc
gaccgcggcctgttcaccgtctacatggtgggcgaaaagcagtcacgggtaggcgaactc
gacgaggagatggtctacgaatcgcgagtgggcgatgtgttcgcactcggtgccaccagc
tggcgcatcgaagagatcacccacgaccgggtgttggtcagtcccgcatacggccaaccg
ggcaggctgccgttctggcacggcgacggcctcggtcgaccggccgaattgggccgggcc
ctgggcgagtttctgcggagcaccaccgaccgcagcaacctggccgagcggctgagcacc
gacggtctcgacgccaacgcagtcaacaacctgatcgctttgctcgacgaacaactcgag
gccaccggccagctccccaccgacaagacgatgatcgtcgagcgctttcgcgacgaactc
ggcgactggcgattggtgctgcactccacctacggtcagcaggtacacgcgccgtgggcc
ctcgcggtcggcgcgaggctgatcgagcgatacggcatcgacgccgcccccacggcatcc
gacgacggcatcatcgtccggcttcccgataccgacgaccagccgcccggcgcggaactg
ttcgtgttcgagcgcgacgagatcgccgacatcgtcaccgagcaggtcggcggatcggca
ttgttcgcgtcgagatttcgcgaatgcgccgctcgcgcactgcttctaccccgacgcaac
cccggcaagcgggcaccactgtggcaacaacggcagcgttcggcacagctgctcgacgtc
gctcgtaaataccccacgttcccgatcctgctcgaaaccgtgcgcgagtgcctgcaggac
gtctacgacctccccgccctcgaagacatcctggcccgcatcgggcgacgccagatcagg
atcgtcgacgtcgagacgccgtcaccgtcaccgttcgcgaattcgttgctgttcaactac
gtcggcgctttcatgtacgagggcgacagcccgctcgccgaacggcgggccgccgccctg
tctctcgattcggcgctgctggccgagttgctcggacgcgtcgagctgcgagagttgctg
gacgacagcgtcatcaccaccaccgagctcgagttgcagcgactgcccgaggacagacac
gccaaagacatcgagggtgttgcggatctgctgcggctgctcggtcctctgaccgccacg
gaagtcggagagcgcaccaacggcgacgaattcccgcagtggctcgccgagttggccgat
gcaaagcgggcaatggaagtttcgttcgccggccagaactggtggacggccatcgaggac
gcggctcgcttgcgcgatgcactcggtgttccgctaccgatcggcactcccgccgcgttc
atcgagcccgtcgacgacccactcgtcgacctgatcagccggtacgcccgaacccacgga
ccgttcaccctcgacgacgcagccgcgcggttcggcgtcggtaccgccgtggtgcgtgac
gttctgcgccgactggccgtggacaaacgcgtcgtcgagggcgaattccgtcccggtgca
acgggcagtgaatggtgcgacgccgaggttcttcggcgattgcggcggcgatctctggcg
gcggcacggcaggaagtcgaacccgtgtccaccgccacgctcggccgcttcctgccggcg
tggcagcacgtggacagtcgccggttgagcggcatcgacggtgtggcaacggtcatcgaa
cagcttgcgggcgtgcccgttccggcgtcggcgtgggaatctctcgtgctcgcctcccgg
gtgagcgactacagccccgccatgctcgacgagttgacctccaccggtgaggtgttgtgg
gcgggacacggtgcgatttcgtcgaaagacggctgggtgagcctgcacatggccgatacc
gcgccactgaccctggtgcccgccgccgaatccgacctgtccgagttgcagattcgaatt
caggacgccgtcgcgggcggcggtgcgtacttcttccggcagctctcggacaccgtcggc
agcaccgacgacacggctctgcaggctgcgctctgggagctggtgtgggccggacggctc
agcaacgacacgttcgcgccactgcgagcgctgttgaactccacggccactcgctccgcc
ccgagtcatcgagcaccgcgtcgaaccccgcgcctgcgttcctaccgtcagttcgagcgg
ccgtccctgcccacccgcaccggccccccgacggccggcggccgatggtcgcgattgccc
gaactcgaaccggacctcaccgtccgggctcatgccaccgcagatgtacttctcgaacgc
tatggcgtggtgacccgcggttcggtcatgaacgaaggtgtccccggcggattcgccacg
atgtacaaggtgctgacggggttcgaggattcgggtcgctgccgccgcggctatttcgtc
gattcgctgggcggcgctcagttctccacctccgacgtcgtcgaccggttgcgtagttac
gacgaaccgaagaagaacgccaccgccgtcgtactcgcgtcctgcgatccggccaacccc
tacggcggagcactgccctggccgaaggccggcggcgaagacaccgacgacacgacgaag
caccggccgggtcgcaaggcgggagcgctggtcgtactcgttcgtggggagttgacgatg
ttcgtcgaacgtggcgggaagtcggtgctgaccttcggcgacaacaccgaggacatcgct
tctgcagcaacggcattggcgaccactgtcaagcgcggcggggtggacaagttactggtc
gaacggatcaacggtcacgacatccacggcacggacttctcgaagacgctgaccgcggcc
ggtttctcggcgactccccgcggactacgcctgcggcgctga

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