KEGG   Rhodoferax ferrireducens: Rfer_0028
Entry
Rfer_0028         CDS       T00334                                 
Name
(GenBank) type I site-specific deoxyribonuclease, HsdR family
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
rfr  Rhodoferax ferrireducens
Brite
KEGG Orthology (KO) [BR:rfr00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:rfr02048]
    Rfer_0028
Enzymes [BR:rfr01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     Rfer_0028
Prokaryotic defense system [BR:rfr02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   Rfer_0028
SSDB
Motif
Pfam: T1RH-like_C SWI2_SNF2 HSDR_N ResIII SNF2-rel_dom Phage_int_SAM_6
Other DBs
NCBI-ProteinID: ABD67790
UniProt: Q223H1
LinkDB
Position
complement(29673..32813)
AA seq 1046 aa
MVESDLEQLALTWFQDTGWDYRAGPDIAPDSDSPQRSDYRQMLLQGELREALSRLNPQVP
AAVLDDVAHQLSKPDHPSLIQSNRAFHEALVGGVPVEVEVNGERRGDRVVLVDFDTPERN
RFLVVNQFTVQGSKQPRRPDLVCFINGLPIAVIELKNLAAEQVGVQDAFHQLQTYKDELA
DLFVTNEALVASDGLHARIGSLTASFERFLPWRTVKNENDRPLLEFELEKVVRGFFAPAL
LLDYLRYFVLFEMADGQVVKKIAAYHQFHAVRAAVKAAVIAATPPATNAAQEQWASYAER
VKPGSRMGGIVWHTQGSGKSISMVCFAAKLMQQPEMHNPTLVVVTDRNDLDGQLFQTFVG
ARSLLREQPQQAGSRDELRALLAGRPSGGIIFTTVQKFTPDAGEEVFPLLSERNNIVVMA
DEAHRSQYGFRAVLDKKTGKYKYGFAKHLRDALKNATFVGFTGTPIEAGDHDTRAVFGEY
VSIYDIQDAVDDGATVPIFYESRLAKLNLNQVEMEKLNADVEDVFEDEEDAALIEAEKTR
WAALEKLVGAKERVDLVAADIVQHFEARNTAVAGKGMVVAMSREICARLYAAIIKLRPDW
HSDDPAQGAIKVVMTGSAADATLLQPHIYNSAAKKLLERRFKDATDPLKLVIVRDMWLTG
FDVPCLHTMYIDKPMRDHNLMQAIARVNRVFRDKEGGLVVDYIGIAAELRKALRTYTESK
GKGQPTLDATEALAKLQELMEVARHLLHGFDFSAYRTQATTLLLPAANFVLGLDDGKKRW
ADVVLAITKAFSLCGTLDDAALLREEIAFFQAIKAVIAKATTSDAKLSEEGRNAVLKQIL
DNAVVAEGVEDIFKLAGLERPDIGILSDAFLEEVRQLPQRNFAVELLQKLLNDQVKSRMR
TNVVMERKFSERLQAALNRYLSRAVESAQVIEELIAMAKEFREAALRGNKLGLNTSELAF
YDALTDNESAVREMDDEVLKKIAVEITEKLRNSTSVDWQKRESVRARLRNLVRITLRRYK
YPPDMQEEAIRLVLEQAERLSDAWTK
NT seq 3141 nt   +upstreamnt  +downstreamnt
atggttgaatccgacctcgagcaactcgccctcacttggtttcaggacaccggctgggac
taccgcgctggccccgacattgcacctgacagcgacagcccccagcgcagcgactaccgc
caaatgctgctgcaaggcgagctgcgcgaggcgctctcaaggctgaacccgcaagtcccc
gccgctgtgctggacgatgtggcgcaccagttgagcaagccagaccacccttcgctcatc
caaagcaaccgtgcgttccacgaagcgcttgtgggcggtgtaccggtagaggtggaagtg
aacggcgagcgccggggcgaccgcgtggtgttggtggactttgacacgcccgagcgcaac
cgcttcttggtggtgaaccagttcaccgtgcaaggcagcaagcagccgcgccggcccgac
ctggtgtgtttcatcaacggcctgcccattgcggtgatagagctgaaaaatttggctgcg
gagcaggtgggtgtgcaagatgccttccaccagttgcagacctacaaagacgagctggcc
gacctgtttgtaaccaacgaggccttggtggcttccgacggtttgcatgcgcgcataggc
tcgctcaccgccagctttgagcgctttttgccctggcgcacggtcaagaacgagaacgac
cgcccgctgctggagtttgagctggaaaaagtggtgcgcggcttctttgcgcccgcgctc
ttactggactacctgcgctacttcgtgctgtttgagatggccgacggccaggtagtgaaa
aagattgctgcctatcaccagtttcacgcggtgcgtgcggcggtcaaggcggcggtgatt
gccgccacgccacccgccaccaacgcggcgcaagagcaatgggccagctatgccgagcgg
gtgaagcccggctcgcgcatgggtggcattgtgtggcacacgcagggctcgggcaaaagc
atttccatggtgtgctttgccgccaagctgatgcaacagccagaaatgcacaaccccacg
ctggtggtggtgacggaccgcaacgatctggacggccagttgttccagacctttgtgggt
gcacgcagcctgctgcgcgagcagccgcagcaagcgggcagccgcgacgaactgcgcgcg
ttgctggccgggcggccatcgggcggcatcatcttcaccacggtgcagaagttcacgccc
gatgctggggaagaagtgttcccgctgctgagtgaacgcaacaatatcgtggtgatggcc
gacgaagcgcaccgctcgcaatacggctttcgcgcggtgctggacaagaagaccggcaaa
tacaaatacggctttgccaagcacctgcgtgatgcgctcaagaacgccaccttcgtcggc
tttaccggcacgcccattgaggcgggcgaccacgacacccgcgccgtgtttggcgagtac
gtcagcatttatgacattcaagacgcggtggacgatggcgccacagtgccgatcttctac
gagagccgcctggccaagctgaacttgaaccaggtggagatggagaagctgaacgcagat
gtggaagatgtctttgaagacgaagaagacgcagcgctgatagaggccgagaaaacccgt
tgggcggcgttggaaaaactggtgggtgccaaggagcgcgtggacctggtggcggcagac
atcgtgcagcactttgaggcgcgcaatacggcggtggcgggcaagggcatggtggtggcc
atgagccgcgagatttgcgctcgactttacgcagccatcatcaagctgcgccccgactgg
cacagcgacgaccccgcacagggggctatcaaggtggtgatgaccggctctgcagcagac
gctacgctgttgcagccgcacatctacaacagcgctgccaagaagctgctggagcgccgc
ttcaaagacgcaacggacccgctgaagctggtgatcgtgcgcgacatgtggctcaccggt
tttgacgtgccctgcctgcacaccatgtacatcgacaagccgatgcgcgaccacaaccta
atgcaggccattgcccgcgtgaaccgcgtgtttcgcgacaaagagggcggcctggtggtg
gactacatcggcattgccgccgagctgcgcaaggcgctacgcacctacaccgagagcaag
ggcaagggccagcccacgctggatgccaccgaggcacttgccaagttgcaagagctgatg
gaggtggcgcgccacctgctgcacggttttgatttcagcgcctaccgcacccaggccacc
acgctgctgctgcctgccgccaactttgtgctgggactggacgacggcaagaagcgctgg
gccgatgtggtgctggccatcaccaaggcgttttcgctgtgcggcacgctggacgatgcg
gcgctgctgcgcgaggagattgcgttcttccaggctatcaaggcggtgattgccaaggcc
accacgtcggacgccaagctgtcggaagaaggccgcaacgcggtgctcaagcagattctg
gacaacgcggtggtggccgagggggtggaagacatcttcaagctcgccgggctggagcgg
cccgacattggcatcctgtccgatgcttttttggaagaagtgcgccagctaccgcaacgc
aactttgcggtggagttgctgcaaaagttgctgaatgaccaggtgaagtcgcgcatgcgg
accaacgtggtgatggagcgcaagttcagcgagcgcctgcaggctgcgctgaaccgctac
ctgagccgcgccgtggagagtgcgcaggtgattgaagaattgattgccatggccaaggag
ttccgcgaagccgcgctgcgcggtaataagctgggcctcaacacgtcggaactggctttt
tacgatgcgctgacagacaacgaaagcgccgtgcgcgagatggatgatgaggtgctaaag
aagatcgcggtggagatcaccgagaagctgcgcaacagcacctcggtggactggcaaaag
cgcgagagcgtgcgcgcccgcctgcgtaacctggtgcgtatcaccctgcgccgctacaag
tacccgcccgatatgcaggaagaagccatccggctggtgttggagcaagcggagcggctg
tcagacgcttggacaaagtga

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