Rhizobium gallicum bv. gallicum: RGR602_CH01504
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Entry
RGR602_CH01504 CDS
T03539
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rga
Rhizobium gallicum bv. gallicum
Pathway
rga03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rga00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGR602_CH01504 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rga03019
]
RGR602_CH01504 (rnr)
03016 Transfer RNA biogenesis [BR:
rga03016
]
RGR602_CH01504 (rnr)
Enzymes [BR:
rga01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RGR602_CH01504 (rnr)
Messenger RNA biogenesis [BR:
rga03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RGR602_CH01504 (rnr)
Transfer RNA biogenesis [BR:
rga03016
]
Prokaryotic type
tRNA degradation factors
RGR602_CH01504 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
FaeA
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
AJD40856
UniProt:
A0A0B4X0X9
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All DBs
Position
complement(1512623..1514962)
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AA seq
779 aa
AA seq
DB search
MGKRPGKIGRASRDAAPVEPLNIVHGALPSREVILRFIAEHPQKASKRELAKAFGLKGDS
RVELKHMLRDLEQEGMLQKTRKSLIRPGALPPVTVLDITTRDKDGELIARPAEWPEDQGV
APAVAIRQTSPAGRQGKGKTPVAGMGDRVVAKIFPAADRGGPAYTARIIKIIDKRRGATM
GVFRTAPGGAGRLLPIERRGEEMLIDPDYTGDAKDGDLVEVEIARLGRFGLPRAKVLSVV
GSVASEKAISMIAIHAHGIPHVFPQPVIDEADAARPATMSHREDWRDVPLITIDPADAKD
HDDAVYAEPDPSPDNPGGVIITVAIADVSYYVRSNSALDREALKRGNSVYFPDRVVPMLP
ERISNDLCSLKEGVDRPALAVRMVFSKEGRKAGHTFHRIMMKSAAKLSYSNAQAAIDGKP
DDKTGPMLEPILKPLWHAYEVIRRGRERRQPLELDMPERKILLKPDGTVDRVVVPPRLDA
HKLIEEMMIQANVCAAETLEKKRQVLIYRVHDGPTLAKQEVLREFLATLGISLAKGGNVR
ANNFNGILAKAENTPHQTMVNEMVLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYAD
LIVHRALVGSLGLGEGGITPQEEAALDDIAAEISTFERRAMAAERETVDRLVAHHLSTRV
GEEFKGRVSGVTKSGLFVALPDYGADGFVPISTLGTDYFIYDEAHQALSGERTGLGYRLG
DDVTVKLAEAIPLAGALRFEMISEGRNMPTAVRSFHKAGRRDNRQARKMAGTRPPRGRR
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagcgcccggggaagatcggccgcgcgagccgcgatgccgctcccgtcgaaccg
ctaaacatcgtgcacggcgcattgccgtcgcgggaagtcattttgcgcttcatcgccgaa
catccacaaaaggcgtccaaacgcgagctcgccaaggccttcggcctcaagggcgacagc
cgtgtcgaactcaagcacatgctacgggacctcgaacaggaaggcatgctgcagaagaca
cggaagtcgctgatccggccgggcgcactgccgcccgtaaccgttctcgacatcaccaca
cgcgacaaggacggcgaactgatcgcccggccggcggaatggccggaggatcagggcgtt
gcgcctgccgtcgcgatccgccagacgtcgcctgccggacgtcagggcaagggaaagaca
cccgttgccgggatgggcgaccgcgtcgtggcgaagattttcccggcggctgaccgcggc
ggaccggcctataccgcgcgcatcatcaagatcatcgacaagcgccgcggcgcgaccatg
ggtgttttccgcaccgcccccggcggcgccggacggctgctgccgatcgaacggcgcggc
gaagaaatgctgatcgatccggactataccggcgacgccaaggacggcgacctcgtcgaa
gtcgagatcgcgcgcctcggacgcttcggcctgccgcgcgcaaaggtgctgtcggtcgtc
ggttccgtcgcctcggaaaaggcgatctcgatgatcgcgatccacgcgcacggcattccg
catgtctttccgcagccggtaatcgacgaagccgatgcggccaggcccgcgacgatgtcg
catcgcgaggattggcgcgacgtgccgctgatcaccatcgacccggccgatgcgaaggat
cacgacgacgcggtctatgccgaaccggacccttcccccgacaacccgggcggcgtgatc
atcaccgtagcgatcgccgatgtctcctactatgtgaggtccaattcggcgctcgaccgc
gaagcgctgaagcgcggcaattcggtctatttccccgatcgcgtcgtgccgatgctgccg
gagcgcatctccaacgatctctgctcgctgaaggaaggcgtcgaccggccggcgcttgcc
gtgcgcatggtcttttcgaaggaaggccgcaaggccgggcatacgttccaccgcatcatg
atgaaaagtgcggcgaagctttcctacagcaacgcgcaggcggcgatcgacggcaagcca
gacgacaagaccgggccgatgctggagccaatcctgaagccgctctggcacgcctacgaa
gtgataaggcgcggccgtgagaggcgccagccgctcgaactcgacatgcccgagcgcaag
atcctgctgaagccggacggaacggtggaccgcgtcgtcgtgccgccgcggctcgacgcg
cacaagctcatcgaagaaatgatgatccaggccaatgtttgcgcggccgaaacgctcgag
aagaagcgccaggtgctgatctatcgcgtccacgacggcccgaccctcgccaagcaggag
gtcctgcgcgaatttctggcaacgctcggcatctcgcttgctaagggcggcaatgtgcgg
gcgaacaacttcaacggcatcctggcaaaagccgagaacacgccgcatcagacgatggtc
aacgagatggtcctgcgctcgcagagccaggcgatctacagccccgaaaatatcggccat
ttcgggctgaacctgatgaaatatgcgcatttcacctcgccgatccgccgctatgcggac
ctgatcgttcatcgtgcgctggtcggctcgctcggtctcggcgaaggcggcatcacaccg
caggaagaggccgcgctcgacgacatcgccgccgaaatctccaccttcgagcgccgagca
atggccgcggagcgcgagacggtcgaccggctggtcgcccatcatctcagcacgcgtgtc
ggggaagagttcaaggggcgcgtatcgggcgtcacgaaatcgggactatttgtcgccctc
cccgactatggagccgacggcttcgtacctatatctacgctcggcacggactacttcatc
tacgatgaggcgcatcaggcgctgtcgggtgagaggaccgggctggggtaccgtctcgga
gacgatgtcaccgtaaagcttgccgaagcgatcccgctcgccggcgcgcttcgcttcgag
atgataagcgaaggacgcaacatgccgacggcagtgcgctcgttccacaaggcaggccgc
cgtgacaaccggcaggcccgcaaaatggccgggacaaggccgccaagggggcggcgatag
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