KEGG   Rubrivivax gelatinosus: RGE_26430Help
Entry
RGE_26430         CDS       T01803                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase LigD
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rge  Rubrivivax gelatinosus
Pathway
rge03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rge00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RGE_26430 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rge03400]
    RGE_26430 (ligD)
Enzymes [BR:rge01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RGE_26430 (ligD)
DNA repair and recombination proteins [BR:rge03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RGE_26430 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: BAL95982
UniProt: I0HSJ5
LinkDB All DBs
Position
2785388..2787943
Genome map
AA seq 851 aa AA seqDB search
MPRTAAPARDPLQHYRERRDFRATPEPGADAVQPGADTGRFVIQKHDATRLHYDFRLELD
GVLLSWAVPKGPSLDPADRRMAVRTEDHPLAYADFEGRIPAGHYGAGQVIVWDRGSWTPL
AEPRAALAAGKLPFELDGEKLHGAWELVRMKPKPGERGENWLLFKKRDAQARPRAEFDVV
AEQPDSVAATAADKPRRRQSRAALALDSVAPKAPQPETLAPQLATLASAAPSSGSWLYET
KFDGYRLLARIRRGVPRLFTRNGHDWTDKLPALAAALKGLGLQSAWIDGELVALGSRGAA
DFNALQNAFDGRDTARLLYYVFDLPYVQGRDLRELALDTRRALLQSLLDEHPLDGVRFSE
ELPAGGAGPLATACERQLEGVIAKRRDAPYRSLRSEAWLKLKCRRRQEFVVAGYTERTNA
SGEIGSLILAVHDADGRLVHAGKVGTGWDTRAARDLFTRLQPLAREAVPFAAGTPSPGRW
SRRAPGLERWVRPEFVVEVEFAEWTPGGSVRHAVFVGVREDKPAAQVLRERAVVPDTAPS
AAPTASSSGRIARVRITHGERIVDKASGLSKLDLLRWYDGVAERMLPHLKARPVALLRAP
QGVGRPVFFQKHAERTEIPGLVLLDPALWPGHEPLMEIRSAEALLSAAQMNTIEFHTWNA
TTRTIAKPDRLVFDLDPGEGVDFAAVREGALLVRTLLDELGLASWLKTSGGKGLHVVVPV
APRVAVDVVKPFSRAVVAHLAEQVPERFVVRSGPANRVGRIFVDWLRNGEGATTVAAFSA
RARPGLGVSIPVSWDALPELRGGDQWTLANAREHLSFEREDPWAAFWTTRQALAPAMRRL
GFDPRAGGDGR
NT seq 2556 nt NT seq  +upstreamnt  +downstreamnt
atgcccagaaccgccgccccggcccgcgacccgctgcagcactaccgcgaacgccgcgat
ttccgcgccacgccggaaccgggcgccgacgcggtgcagcccggcgccgacaccggccgc
ttcgtcatccagaaacacgacgcgacgcggctgcactacgacttccggctggaactcgac
ggcgtgctgctgtcctgggccgtgcccaagggccccagcctggacccggccgaccggcgc
atggcggtgcgcaccgaggaccacccgctggcctacgccgacttcgaaggcaggatcccg
gccggccattacggcgccggccaggtcatcgtctgggaccgcggcagctggacgccgctg
gccgaaccgcgcgccgcgctggccgccggcaagctgccgttcgagctcgacggcgagaag
ctgcacggcgcctgggagctggtgcgcatgaagcccaagcccggcgagcgtggcgagaac
tggctgctgttcaagaaacgcgacgcccaggcgcggccacgcgccgagttcgacgtcgtc
gccgaacagcccgacagcgtcgccgcgacggctgccgacaagccccggcgccggcaaagc
cgcgccgcgctggcgctcgacagcgtcgcgcccaaggcgccgcagcccgagacgctggcg
ccgcagctcgcgacgctggcctcggcggcaccgagcagcggcagctggctctacgagacc
aagttcgacggctaccggctgctggcgcgcatccgccgcggcgtgccgcggctgttcacg
cgcaacggccacgactggacggacaagctgccggcgctggccgcggcgctgaagggcctg
gggctgcagtcggcctggatcgacggcgagctggtcgcgctcggcagccgcggcgccgcc
gatttcaacgcgctgcagaacgccttcgacggccgcgacacggcccgactgctctactac
gtcttcgacctgccctacgtgcagggccgcgacctgcgtgaactggcgctggacacacgc
cgtgcgctgctgcagtcgctgctcgacgaacatccgctggacggcgtgcgcttctcggag
gagctgccggccggcggcgccggcccgctggcgacggcctgcgaacgccagctcgaaggc
gtcatcgccaagcgccgcgacgcgccctaccgctcgctgcgcagcgaggcctggctcaag
ctcaagtgccgacgccgccaggagttcgtcgtcgccggctacaccgagcgcacgaacgcc
agcggcgagatcggcagcctgatcctcgccgttcacgacgccgacggccgcctcgtgcac
gccggcaaggtcggcaccggctgggacacacgcgccgcacgggatctgttcacgcggctg
cagccgctggcccgcgaggccgtgccgttcgccgccgggacgccctcgcccgggcgctgg
agccgccgcgcccccggactggaacgctgggtgcggccggagttcgtcgtcgaggtcgag
ttcgccgaatggacgcccggcggcagcgtgcgccacgcggtcttcgtcggcgtgcgcgaa
gacaagccggccgcccaggtgctgcgcgaacgcgccgtcgtgcccgacacggcgccgagc
gccgcgcccaccgcctcgtccagcggccgcatcgcgcgcgtgcgcatcacgcacggcgag
cgcatcgtcgacaaggccagcggcctgagcaagctggacctgctgcgctggtacgacggc
gtcgccgaacggatgctgccgcacctgaaagcccggccggtggcgctgctgcgcgcgccg
caaggcgtcggacggccggtgttcttccagaagcacgccgaacgcaccgagatccccggc
ctggtgctgctcgatccggcgctgtggcccggccacgagccgctgatggagatccgtagc
gccgaggcgctgctgtcggcggcgcagatgaacacgatcgagttccacacctggaacgcc
acgacgcgcacgatcgccaagcccgaccgcctcgtcttcgacctcgaccccggcgagggc
gtcgacttcgccgccgtgcgcgaaggcgcgctgctggtgcgcaccctgctcgacgagctg
ggtctggcctcgtggctgaagaccagcggcggcaagggcctgcacgtcgtcgtgccggtc
gcgccgcgcgtggcggtcgacgtcgtcaagccgttctcgcgcgccgtcgtcgcccacctc
gccgaacaggtgcccgaacgtttcgtcgtgcgcagcgggccggccaaccgcgtcggccgc
atcttcgtcgactggctgcgcaacggcgaaggcgcgacgacggtggccgcgttctcggcc
cgcgcccgcccggggctgggggtctcgatcccggtgtcctgggacgcgctgccggagctg
cgcggcggtgatcaatggacgctggccaacgcacgcgagcacctgtccttcgaacgcgag
gacccgtgggccgcgttctggaccacgcgccaggcgctggcgccggcgatgcgccgcctc
ggcttcgacccgcgcgccggcggggatggccgctga

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