Rhodococcus jostii: RHA1_ro00237
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Entry
RHA1_ro00237 CDS
T00382
Name
(GenBank) possible DNA ligase (ATP), C-terminal
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rha
Rhodococcus jostii
Pathway
rha03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RHA1_ro00237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rha03400
]
RHA1_ro00237
Enzymes [BR:
rha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RHA1_ro00237
DNA repair and recombination proteins [BR:
rha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RHA1_ro00237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ABG92073
UniProt:
Q0SK63
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All DBs
Position
309577..310521
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AA seq
314 aa
AA seq
DB search
MLATLGSPPGGDDWAVEMKFDGVRAVATITPAAVHLFSRDNADITAAYPEIAAGLSEINP
GRGVIVDGEIVAPAAGSGRPRFDLLRQRTPIQDPPPALQRAVPVAFCIFDLLVHRGAPIL
QWPYLERRQLLADLNLDLEGEALRVPPHWVDVAGEDMLRLADEHGLEGIVAKRMTSPYRP
GRRSPDWVKTPLRNSAEVIVGGWEATSRGGLRSLIVGAHADQVGLIFVGHVGSGFTESHR
RRTLMLLRPLERPSSPFDDHVPDELAAHARWVEPILVGTVEYREFTLDRRLRHPSWKGFR
AGIDPRWVTVEELP
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgctggcgacgctcggctcaccaccgggtggagacgactgggcggtggagatgaaattc
gacggtgtacgcgccgtcgccaccatcaccccggccgcggtgcacctgttcagccgcgac
aacgccgacatcaccgctgcatacccggagatcgccgccggactctccgagatcaaccca
ggccgaggcgtaatagtcgatggtgagatcgtcgcgcccgcagccggcagcggccgaccg
cgcttcgacctgctccgacagcggacccccatccaggatccaccgcccgcgctgcagcgc
gccgtaccggtcgccttttgcatcttcgatctgctggtgcaccgcggggcgccgatcctg
cagtggccgtacctcgagcgccgacaactcctggccgacctgaacctcgatctggagggt
gaggctctacgggtacctccacactgggtcgatgtcgccggcgaggacatgctccggtta
gccgacgagcacggtctcgaaggaattgtcgccaagagaatgacctcgccctatcggccc
ggacgccgctcaccagattgggtcaaaactccgctacgcaacagcgccgaggtgatcgtc
ggtgggtgggaagcgaccagccgcggcggtctgcggtcgctgatcgtcggtgcccacgcg
gaccaggtcggcttgatattcgtcgggcacgtcggttccggcttcaccgaatcccaccgg
cgccgaacgctcatgctgctccggccactcgagcgcccttccagtcccttcgacgatcat
gttcccgatgagcttgccgctcacgcccgctgggtggaaccgattctggtcggcaccgtc
gagtaccgggagttcaccctggaccggcggctccgccacccgtcgtggaagggattccgc
gcggggatagacccgagatgggtgaccgtcgaggagttaccgtag
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