Rhodovulum sp. P5: RGUI_1048
Help
Entry
RGUI_1048 CDS
T04813
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rhc
Rhodovulum sp. P5
Pathway
rhc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rhc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RGUI_1048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rhc03019
]
RGUI_1048
03009 Ribosome biogenesis [BR:
rhc03009
]
RGUI_1048
Enzymes [BR:
rhc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RGUI_1048
Messenger RNA biogenesis [BR:
rhc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RGUI_1048
Ribosome biogenesis [BR:
rhc03009
]
Prokaryotic type
rRNA processing factors
RGUI_1048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ARE39189
UniProt:
A0A1V0PSS6
LinkDB
All DBs
Position
complement(918638..921814)
Genome browser
AA seq
1058 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVDEFDFESVNKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALLAEERAYAAEIDEDDPAEKEKPKRRSRGRRR
GRSSDAQPDASPAPSDESVATEGAEQDTQDAVAVATDAALEQTVEPTGDDVAAPDVAEAD
MASADTPDVAEVTEAADPVPAVQEPPEVVGEPVADVPAQDEESAPEGEAVVTDPEAPDTV
SDAAEAPAEVEEAPAEENTAAEPASEEAAGSGEDDDTPPRTMAAAARSDDPVTSREPGLD
IPGMDVVDLDEEDDQVTALVSPDEASETGATASKPRRSRRPSRSARVSEDEDDVIAEDAA
DDIGADDDHEDDTAGDDDDHALRDNQIESVAEEDVAEEIRPRKPRPRRYKIQEVIKVRQI
MLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITSATDRKKLKQIASEM
DVPEGAGLIIRTAGAQRTKSEIKRDYEYLQRLWEQIRELTLKSIAPAPIYEEGDLIKRSI
RDLYSREIDEVLVEGERGYRVAKDFMKMIMPSHAKNVRHYQDPLPLLARYQVESYLSSMF
NPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAADEVARQLRLRDL
AGLIVIDFIDMEERKNNAAVEKRLKDKLKNDRARIQVGRISGFGLLEMSRQRLRPGMIEA
TTQPCPHCHGTGLIRSDDNLALVILRQIEEEAVRGRSREVLVKAPIGIVNYLMNQKREHV
AQIEARYGLSVRVEADPFLISPDFSIERFKTALRSVPEVSAPVISVDTSDMIETVEEEEV
EPETEETEAPVQDNGEKPKKRRRRRRKKKSSQTSDGDSFDESAEDGTDDSGDEDGGDDAA
ESSDGEADAKPKRSRSRRSRNRKPRRGQDTAEDAGSDAAAEDAEQGEPAVVEAVAEPDAA
VVEEAAVETPGPVLEIVTSEEVSVSVPDEPTVADDTPTPAVAEEEPEIQPEPQDTPVPEA
VADPVPLAASAPEPAVEETAESDDDDKPKRRGWWSLGR
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaatgctcatcgacgccacccacgcggaggagacccgcgtcgtggtggtg
gacggaaacaaggttgacgagtttgactttgaaagcgtcaacaagcgtcagcttgcaggt
aacatctatctagcaaaagttacgcgggtcgaaccctcgcttcaggcggcgttcgtcgat
tatggcggcaaccggcacggctttctggccttttcggaaatccaccccgactattaccag
attccggtcgccgaccgggaggccctgctggccgaggaaagggcctacgcggccgagatc
gacgaggatgatccggctgagaaggaaaagcccaagcggcgcagccgcgggcggcgccgt
ggccggtcgagcgatgctcagcccgacgcgtccccggcgccctccgacgagagtgtagcg
accgagggtgcggaacaggatacgcaggacgccgttgcggtcgcgaccgacgcggctttg
gagcagacggtcgagccgacaggtgacgacgttgccgcccccgatgttgccgaagccgat
atggccagcgccgatacgccggacgttgccgaggtgacggaggctgccgatccggtaccg
gccgttcaggaacccccggaagtggtcggtgaacccgtcgcggatgtccccgcgcaggat
gaagaatcggcacccgagggcgaggcagttgtcaccgaccccgaggcgcctgacacggtt
tccgacgcggccgaagccccggctgaggtggaagaagccccggctgaggaaaacacggca
gccgaaccggcatcggaagaggcagccgggagtggcgaagacgacgacactccgcccaga
acgatggcggccgcggcgcgcagcgatgaccccgtgacaagccgcgaacccgggctggac
atcccgggcatggatgtcgtcgatctcgacgaagaagacgaccaggtgacggcgctggta
tcgccggacgaagcatcggaaaccggcgcgacggcgtcgaagccgcgccggagccgccgg
ccatcccgatccgcccgggtgtccgaagacgaggatgacgtgatcgccgaagatgcagcc
gacgacatcggtgcagacgacgaccacgaggacgacaccgccggggacgacgatgaccac
gccctgcgcgacaaccagatcgagtccgtcgccgaggaagacgtggccgaagaaatccgg
ccccgcaaaccccgcccgcgccgctacaagatccaggaggtcatcaaggtccggcagatc
atgctggtgcaggtggtcaaggaagagcgcggcaacaagggtgcggcgctgacgacctat
ctgtcgctcgccggccgctattgcgtgctgatgcccaacacggcccgcgggggcggcatc
agtcgcaagatcaccagcgcgacagatcgcaagaaactcaaacagatcgcgtccgaaatg
gatgtgccggaaggcgccggcctgatcatccgcaccgcgggcgcacagcgcaccaagtcg
gaaatcaagcgtgattacgagtatcttcagcgcctgtgggagcagatccgcgaactgacg
ctgaaatccatcgcgccggccccgatctacgaggaaggcgacctgatcaaacgctcgatc
cgcgatctttacagtcgcgagatcgatgaggttctggttgagggcgaacgcggctatcgc
gtggccaaggacttcatgaagatgatcatgccgtcccatgccaagaatgtgcggcactat
caggatccgctgccgctcctcgcgcgctatcaggtcgaaagctacctgagttcgatgttc
aacccgacggttcagctgaaatcgggcggctacatcgtgatcggcgtgaccgaggcgctg
gtcgccatcgacgtgaactctggccgggcgacgaaggaaggctcgatcgaggaaacggcg
ctgaagacgaaccttgaggccgcagatgaggtcgcccggcagttgcggctgcgcgacctg
gcgggtctgatcgtcatcgacttcatcgacatggaagagcgcaagaacaacgccgcggtc
gagaagcgcctgaaagacaagctgaaaaacgaccgtgcgcggatccaggttggccgcatc
tcgggctttggcctgttggagatgagccgccagcgcctgcgccccggcatgatagaggcg
acgacccaaccctgcccgcattgtcacggcaccgggctgatccggtccgacgacaacctt
gcgctggtcatcctgcgccagatcgaggaagaggccgtccgcggccggtcgcgcgaggtt
ctggtcaaggcgcccatcggcatcgtcaactatctgatgaaccagaagcgcgaacatgtc
gcccagattgaggcccggtatggcctgtcggtccgggtagaggccgatccgttcctgatc
tcgcccgatttctccatcgaacggttcaagacggcgcttcggtcggtgcctgaggtcagc
gcgccggtgatttccgtcgatacctccgacatgatcgaaacggttgaggaggaggaggtc
gagccggaaacggaagagaccgaagccccggtgcaggacaacggtgaaaaaccgaagaag
cgccgccggcgccgtcgcaagaagaagtcttcgcagacatcggatggcgatagctttgac
gagtccgcggaggacggcacagacgactccggcgacgaggatggcggcgacgacgcggcc
gagagcagcgatggggaggccgacgccaagccgaaacgcagccgcagccgccggtctcgc
aaccgcaagccgcggcgcgggcaggacacagcggaagacgccggcagcgatgccgccgcc
gaggatgcggagcagggcgaaccggccgtcgtggaagcagtggccgaacccgatgcggct
gtggtggaagaggccgccgtcgaaacgccggggccggttctggaaatcgtgacgagcgaa
gaggtctcggtatccgtgcccgatgaaccgaccgtggccgacgacactccgacccccgcc
gttgcggaagaagaacccgaaatccagcccgagccgcaggacacacccgtgcccgaggcg
gttgcagaccccgtgccgctcgccgcaagcgcgccggagcctgccgttgaagaaacggcc
gagagcgacgacgacgacaagcccaagcgccgcggctggtggtcgctcggccggtaa
DBGET
integrated database retrieval system
