Rickettsia conorii subsp. heilongjiangensis: Rh054_05735
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Entry
Rh054_05735 CDS
T01587
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
rhe
Rickettsia conorii subsp. heilongjiangensis
Pathway
rhe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rhe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Rh054_05735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhe03400
]
Rh054_05735
Enzymes [BR:
rhe01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Rh054_05735
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Rh054_05735
DNA repair and recombination proteins [BR:
rhe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Rh054_05735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
AEK75037
LinkDB
All DBs
Position
980603..981424
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AA seq
273 aa
AA seq
DB search
MPELPEVETLKNSLKDKLIGLIIENVELKRDNLRYKLSTLLATEILNTNILDVRRRAKYL
IIDFNNDYSLIVHLGMSGRLTLQSANYKTQKHDHVIFDLSNGEKLIFNDTRRFGMIYSFK
TDLLEKEFFNDLGIEPFSDLLTLEYLKDKLQTKKIPIKNLIMDNRFVVGVGNIYASESLH
LARIHPDKSGSDLRDDEIENLIKSIRDVLTKAITAGGTTLKDFVNGDNKPGYFTQQLKVY
GREGQSCLSCSSTIIKTKHSGRSTFYCKTCQYS
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgccggaacttcctgaagtagaaactcttaaaaactctctaaaagataagctaatcggg
cttattatagaaaatgtagagttaaaaagagataatttacgttataagctatccacgctt
ttagctacagaaatcttaaatactaatatactggatgttaggcgtcgtgcaaaatattta
attatagattttaataatgattattctttaatagttcatctaggcatgagcggtagactt
actctgcaatctgctaattataaaactcaaaaacacgatcatgtgatttttgatttaagt
aacggcgaaaagttaattttcaacgatactagacgattcggtatgatttatagttttaag
actgatctcttagaaaaagaattttttaatgatttaggcatagagcctttttctgattta
ttgacgttagaatatctaaaagataagctacaaactaaaaaaataccaataaaaaacttg
attatggataatagatttgtagtcggagtcggtaatatctatgcttccgaaagtcttcat
ttagctagaattcatccggataaatcaggtagcgatttaagggatgatgaaatagaaaat
ttaattaaatcgattagagatgtgttaactaaagctataactgccggcggtactactctt
aaagattttgtaaacggcgataacaaacctggttattttactcagcaacttaaggtttac
ggtagagagggacaaagttgtttaagctgctctagcactattatcaagacaaaacattca
ggcagaagtactttttattgtaaaacttgccaatatagttaa
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