Rheinheimera sp. D18: E0Z06_05675
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Entry
E0Z06_05675 CDS
T05923
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rhh
Rheinheimera sp. D18
Pathway
rhh03030
DNA replication
rhh03410
Base excision repair
rhh03420
Nucleotide excision repair
rhh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E0Z06_05675 (ligA)
03410 Base excision repair
E0Z06_05675 (ligA)
03420 Nucleotide excision repair
E0Z06_05675 (ligA)
03430 Mismatch repair
E0Z06_05675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhh03032
]
E0Z06_05675 (ligA)
03400 DNA repair and recombination proteins [BR:
rhh03400
]
E0Z06_05675 (ligA)
Enzymes [BR:
rhh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E0Z06_05675 (ligA)
DNA replication proteins [BR:
rhh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E0Z06_05675 (ligA)
DNA repair and recombination proteins [BR:
rhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E0Z06_05675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E0Z06_05675 (ligA)
MMR (mismatch excision repair)
DNA ligase
E0Z06_05675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E0Z06_05675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QBL09039
UniProt:
A0A4P6VSD7
LinkDB
All DBs
Position
1183737..1185770
Genome browser
AA seq
677 aa
AA seq
DB search
MTQSIVLQLQQLRQQLEEYSYQYYVLDNPSMPDAEYDRLYRQLQQLEAAHPELITADSPT
QRVGAAPLIKFGQVAHSISMLSLDNAFDAAEFHAFTKRIAERLDACAEFSFCCEPKLDGL
AVSIRYENGLLVQAATRGDGYTGEDITSNVKTIRAVPLKLKGDKVPAVLEVRGEVFMPLA
GFTAMNDKARAEGEKIFANPRNAAAGSLRQLDPKISAQRPLMFYAYAVGAVDDVSGLLDN
HSHHRRLMQLKDWGLPVCPEIRLVSGGEAALEYYQDILTRRAKLTYEIDGVVIKVDNLAQ
QQALGFVARAPRWAIAFKFPAQEMLTSLLDVEFQVGRTGAITPVARLEPVVVGGVTVSNA
TLHNQDEIERLGIKIGDNVIVRRAGDVIPQIVSVVLEQRPDAATDIVFPTQCPVCGSAIE
RVSGEAVARCSGGLFCAAQLKESIKHFVSRKAMDIDGLGDKLVEQLVDQQLVKTPADIYQ
LDMAALVGLERMAEKSALKLLAAIAQSKTTSLPRFIYALGIREVGEATALSLANHFASLE
QVQQASLEQLLTVPDVGTVVAEHLTSFFNESHNQTVIAQLIAAGIHWPAIEQQAVTEQPF
AGQTLVLTGTLTSMGRDDAKARLQRLGAKVSGSVSAKTHAVIAGDNAGSKLAKATELNVP
VWTEQQMLDVFTQYGVT
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgactcagtctattgtgctgcagttgcagcaactgcgacagcagttagaagaatacagt
tatcaatattacgtattagataatccaagcatgccagatgcagaatacgaccgattatat
cgccagctacaacagctggaagcggcgcaccctgaactaataacggctgattcacccacc
caacgcgtcggcgctgcaccactaattaaatttggccaagttgcgcacagtatttcaatg
ttatcgttagataacgcctttgatgctgctgaatttcacgcctttactaaacgcattgcc
gagcggcttgatgcgtgcgccgagtttagtttttgttgtgaacccaaattggatggttta
gcggtaagcattcgttatgaaaatggcttattggtgcaagcggcaacccgaggtgatggt
tataccggtgaagatattaccagcaatgtaaaaaccattcgtgccgtgccattaaagcta
aaaggcgacaaggtacctgcggtattagaagtacgaggcgaagtgtttatgccattggct
ggctttaccgcgatgaatgataaagcccgcgctgagggtgaaaagatatttgccaaccca
cgtaatgcggcggcgggtagtttgcgacaacttgatccgaaaattagtgcccagcggcca
ttaatgttttatgcctatgccgtgggtgcggttgacgatgtaagcggcttattagataac
cacagtcatcatcggcgtttaatgcagttaaaagactggggtttgccggtgtgcccagaa
attcgtttagtgagtggtggcgaagcggcactggaatattatcaagacatacttactcgg
cgggctaagcttacttacgaaattgatggtgtagttatcaaggttgataaccttgcgcag
cagcaagcactgggttttgtcgctagagcaccacgctgggctatcgcttttaagtttccg
gcgcaagaaatgcttacctcgctgttagatgttgaatttcaggtagggcgcacaggtgct
attacgccggttgcgcgtttagagccagtggtagtgggcggtgttacggtaagtaatgcc
accttacataatcaggatgaaatagaacggctaggtattaaaattggcgacaacgtaata
gtgcgccgcgccggtgatgttattccgcaaattgtctcggtagtgctagagcaacgccct
gatgccgcaacagatattgtgtttcctacacagtgtccggtatgtggttcagcaattgaa
cgtgtaagtggtgaagccgtagcgcgttgcagtggtggtttgttttgtgcagcgcagcta
aaagaatctattaaacattttgtctcacgtaaagcgatggatattgacggcttaggcgat
aaattggttgagcaattagttgatcagcaattggttaaaacgccggcggatatctaccag
ctagatatggcggcattggttggcttagagcgcatggcagagaaatcagcattaaagcta
ttagctgcgattgcgcagtctaaaactaccagcttgccacggtttatttatgcgttaggt
attcgcgaagtaggcgaggccaccgcccttagtttggctaatcattttgccagtttggag
caggtgcagcaagccagcttagagcagctattaacggtgccggatgttggcactgttgtt
gctgagcacctaaccagcttttttaacgaatcgcataaccaaacggttattgctcaacta
attgctgcaggtattcactggccagccattgagcagcaagctgttactgaacagccgttt
gctgggcaaactctagtgcttactggcaccctaaccagtatgggccgtgatgacgccaaa
gcgcgtttacagcgtttaggggcgaaggtttcaggttcagtatcagctaaaacccatgca
gttatcgcaggcgataatgccggctctaaattagctaaagccactgagcttaacgtgccg
gtatggactgagcagcaaatgttagatgtgtttacgcagtacggagtaacctag
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