Sinorhizobium fredii NGR234: NGR_c20770
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Entry
NGR_c20770 CDS
T00888
Symbol
uvrD2
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rhi
Sinorhizobium fredii NGR234
Pathway
rhi03420
Nucleotide excision repair
rhi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NGR_c20770 (uvrD2)
03430 Mismatch repair
NGR_c20770 (uvrD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhi03400
]
NGR_c20770 (uvrD2)
Enzymes [BR:
rhi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NGR_c20770 (uvrD2)
DNA repair and recombination proteins [BR:
rhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NGR_c20770 (uvrD2)
MMR (mismatch excision repair)
Other MMR factors
NGR_c20770 (uvrD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
ACP25840
UniProt:
C3MEH1
LinkDB
All DBs
Position
2135906..2138521
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AA seq
871 aa
AA seq
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MSKGFDDIPFFDEEPAPRKPAPAAGGIAARAMAARDKTQRPDYLSGLNPEQREAVETLEG
PVLVLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTNKAAREMKERIGVLVGHAVE
GMPWLGTFHSIGVKLLRRHAELVGLRSDFTILDTDDVVRLIKQLIQAEGLDDKRWPAKQF
AGMIDTWKNKGLDPAQIPEGDARAFANGKGRELYVAYQNRLLTLNACDFGDLLLHPIRMF
RANPDVLKDYHDKFRYILVDEYQDTNTAQYMWLRLLAQRPQGAREKHPSPPPPHKGEGQE
RVAASRSPSNLVEERLSAPQASPSPLWGGVGEGKSREEKPRVNICCVGDDDQSIYGWRGA
EVDNILRFEKDFPGAKVIKLERNYRSTEHILGAAAHLIAHNEGRLGKTLFTDRSHPDDEK
VHVHAAWDSEEEARAVGEEIEQLQRRKHNLNDIAILVRASFQMREFEDRFVTLGLNYRVI
GGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRGLGDTTVRNLHDYARARDIPM
LAAATEIIETDELKPKARKALFDVVTDFRRWQTLLETTPHTELAEQILDESGYTAMWQAD
KSAEAPGRLENLKELIRSMEAFESMRGFLEHVALVMDAEQNENMDAVSIMTLHSAKGLEF
DTIFLPGWEEGLFPHQRALDEGGRAGLEEERRLAYVGITRAKRRCHIWFVSNRRIHGLWQ
TTMPSRFLDELPIDHVEVAEQDVSYGGYNRGGYGQSRFDKADPFENTYQTPGWKRAQQHR
TEATRDNWGTRSGHAVERIGYGESGPRTRTIEGELVAKSTTAEPSRFNVGDRVFHLKFGN
GNIAAIEGNKLTIDFDRAGQKRVLDGFVERV
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaggtttcgacgacattcccttcttcgacgaggagccggcgccgcgcaaaccc
gcgcctgccgccggcggcatcgccgcgcgcgccatggccgcccgcgacaagacccagcgg
ccggattacctctccggtctcaaccccgagcagcgcgaagccgtcgaaacgctggagggg
ccggtcctggtgctcgccggcgccggcaccggcaagacgcgggtgctcaccacccgcatc
gcccatatcctttcgaccggccgtgcctacccctcgcaaatcctcgcggtgaccttcacc
aacaaggcggcccgcgagatgaaggagcgcatcggcgtgctcgtaggccatgccgtcgaa
ggcatgccctggctcggcaccttccactcgatcggcgtcaagctcttgcgccgccacgcc
gaactcgtgggcttgagatccgatttcaccatcctcgataccgacgacgtggtgcgcctg
atcaagcagctcatccaggccgaaggcctcgacgacaagcgctggccggccaagcagttc
gccggcatgatcgacacctggaagaacaagggcctcgacccggcgcagatcccggagggc
gacgcccgcgccttcgccaacggcaagggccgcgagctttatgtcgcctatcagaaccgg
ctcctgacgctcaacgcctgcgacttcggcgacctgctgctgcatccgatccgcatgttc
cgcgccaatccggacgtgctgaaggactatcacgacaagttccgctacatcctggtcgac
gagtaccaggataccaacacggcgcaatatatgtggctgcggctgctggcgcagcggccg
caaggtgcccgggaaaaacacccctccccaccccctccccacaagggggaggggcaggag
cgggtggccgcgtcccgctccccatcgaacctagtcgaggaacgcctgtcggcgccgcag
gctagcccctcccccttgtggggaggggttggggaggggaaatcccgggaagaaaagccc
cgcgtcaacatctgctgcgtcggtgacgacgaccagtcgatctacggctggcgcggcgcc
gaagtcgacaatatcctccgcttcgaaaaggatttccccggcgccaaggtcatcaagctc
gagcgcaattaccgctcgaccgaacacatcctcggcgccgccgcccacctgatcgcccac
aacgagggccggctcggcaagacgctcttcaccgaccgtagccacccggacgacgagaag
gtgcatgtgcatgcggcctgggactccgaagaggaggcccgcgccgtcggcgaggagatc
gagcagctccagcgcaggaagcacaatctcaacgacattgcgatcctggtgcgcgcctcc
ttccagatgcgcgagttcgaagaccgcttcgtcacgctcggcctcaattatcgcgtcatc
ggcggcccccgcttctacgagcggctcgagatccgcgatgccatggcctatttccgcctt
gtctgccagccggccgacgatctcgccttcgagcgcatcgtcaacacaccgaagcgcggc
ctgggcgacaccaccgtccgcaaccttcacgactacgcccgcgcccgcgacataccgatg
ctggccgccgcaaccgaaatcatcgaaaccgacgaactgaagccgaaggcgcgcaaggcg
ctcttcgacgtcgtcaccgatttccgccgctggcagacattgctcgaaacgacgcctcat
acggaactcgccgaacagatcctcgacgagagcggctatacggcaatgtggcaggccgac
aagtccgccgaagcgccgggacgcctcgaaaacctcaaggaactcatccgctcgatggag
gccttcgagtcgatgcgcggcttcctcgagcatgtcgcgctggtcatggatgccgagcag
aacgagaacatggatgccgtgtcgatcatgacgctgcactccgccaagggcctggagttc
gacaccatcttcctgccgggctgggaggaagggctatttccgcatcagcgggcgctggac
gagggcggccgcgccggtctcgaggaggagcgccgtctcgcctatgtcggcatcacccgc
gccaagcgtcgctgccatatctggttcgtctcgaaccgccgcatccatggtctctggcag
acgaccatgccctcacgtttcctcgacgaactgccgatcgaccatgtcgaggtcgccgag
caggacgtctcctatggcggctacaatcgcggcggctacggccagtcgcgcttcgacaag
gccgaccccttcgaaaacacctaccagacgcccggctggaagcgcgcccagcagcaccgc
acggaagccacccgcgacaattggggcacccgctcaggccacgccgtcgagcggatcggc
tacggcgaatccggcccccgcacccgcaccatcgagggcgaactcgtcgccaagtcgacg
accgccgaaccctcgcgcttcaatgtcggcgaccgcgtcttccacctcaaattcggcaac
ggcaacattgccgcgatcgaaggcaacaagctgacgatcgatttcgaccgcgccggtcag
aagcgcgtgctggacgggtttgtggaaagggtgtga
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