KEGG   Rhizobium sp. Kim5: Kim5_CH03136
Entry
Kim5_CH03136      CDS       T05501                                 
Symbol
raiR-1
Name
(GenBank) transcriptional activator protein 1
  KO
K20252  LuxR family transcriptional regulator, quorum-sensing system regulator CinR
Organism
rhk  Rhizobium sp. Kim5
Pathway
rhk02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:rhk00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Kim5_CH03136 (raiR-1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rhk03000]
    Kim5_CH03136 (raiR-1)
Transcription factors [BR:rhk03000]
 Prokaryotic type
  Helix-turn-helix
   LuxR family
    Kim5_CH03136 (raiR-1)
SSDB
Motif
Pfam: Autoind_bind GerE Sigma70_r4_2 HTH_23 HTH_10 Sigma70_r4
Other DBs
NCBI-ProteinID: ARQ59169
LinkDB
Position
3152651..3153376
AA seq 241 aa
MIENTYSDKFEPAFEQIKAAPHVDAAIRILQAGYGLDFVTYHLAQTIASKIDSPFVRTTY
PDAWVSRYLLNSYVKVDPIVKQGFERQLPFDWSEVEPTPEAYAMLVDAQKHGIGGNGYSI
PVADKAQRRALLSMNARIPADDWAELVRRCRNEWIEIAHLIHRKAVYELHGENDPVPALS
PREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLRIIN
P
NT seq 726 nt   +upstreamnt  +downstreamnt
atgatcgagaatacctatagcgacaagttcgaacccgccttcgaacagatcaaggctgcg
ccccatgtggatgccgccatccgtattctccaggcaggatatggcctcgatttcgtcacc
tatcatctcgcccagacgatcgcgagcaagatcgattcccccttcgtgcgcaccacctat
cccgatgcctgggtctcccgctacctcctgaacagctatgtgaaggtcgatccgatcgtc
aagcagggcttcgaacgccagctgcccttcgactggagcgaagtcgagccgacgccggag
gcttatgccatgctggtcgatgcccagaagcacggcatcggcggcaacggctattccatt
cccgttgccgacaaggcgcagcggcgtgcgctgctgtcgatgaacgcccgcatcccggcc
gacgattgggccgaacttgtgcggcgctgccgcaacgaatggatcgagatcgcccatctg
atccaccgcaaggccgtctatgagctgcatggcgagaatgatccggtgccagccctgtcg
ccgcgcgagatcgagtgcctgcactggaccgcactcggcaaggattacaaggatatctcg
gtgattctgggcatttcagagcacaccacccgcgactacctgaagaccgcccgcttcaag
ctcggctgcgccacgatttcggccgccgcctcgcgggcggtgcagctgcgcatcatcaat
ccctga

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