KEGG   Rhizobium sp. Kim5: Kim5_PC00578Help
Entry
Kim5_PC00578      CDS       T05501                                 

Definition
(GenBank) ATP-dependent DNA ligase protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rhk  Rhizobium sp. Kim5
Pathway
rhk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rhk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Kim5_PC00578
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhk03400]
    Kim5_PC00578
Enzymes [BR:rhk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Kim5_PC00578
DNA repair and recombination proteins [BR:rhk03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Kim5_PC00578
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: ARQ61988
LinkDB All DBs
Position
pRetKim5c:complement(634181..636817)
Genome map
AA seq 878 aa AA seqDB search
MADNLSKYRAKRDFKKTREPSGEAGVKPSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRKSPEE
ALRKGDFKFTLEGKRLHGSFVLVRMRNDRDGGKRTNWLLIKHHDEHSVEENGAAILEENA
TSVASGRSMDEIAEGKGRKPRPFMMAKADVEADAVWDSKHGLAADERKKKSPKDVATSTA
ADLPDFIEPQLCDRLDRPPAGDDWLHEIKFDGYRIQMRVADGEVTLKTRKGLDWTSKYSG
IAEAASGLPDCIIDGEICALDENGAPNFAALQAALSEGKTGNLVYFAFDLLFDGGEDLRS
MRLFERKERLQNLLTAAGDDPRIRYVEHFQSGGDAVLRSACKLHLEGVISKQMDAPYQSG
RTDTWAKSKCRAGHEVVIGGYAKTNGRFRSLLVGVHRGDHFVYVGRVGTGYGAKKVEMLL
PKLKALETTKSPFGGIGAPKKQAEVVWLKPELVAEIEFEGWTTDGLVRQAAFKGLREDKP
AKEVEAEKPALPAQTETAGPAAAAKHKSARRKGAKAEVMGVLISNPDKPLWPDAGDGEPV
TKEDLARYHETVGAWLIEHIKGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLELVKVFGD
KKPYLQIDRIEGLAAIAQIGGVELHPWNCQPGKPEVPGRLVFDLDPGPDVPFATVVAAAR
QMRDRLDELGLVSFCKTTGGKGLHVVTPLTANKRKALSWAEAKGFAHDVCQQMARDNPDL
YLIKMTKSLRGGRIFLDYLRNDRMATAVAPLSPRARAGATVSMPLTWAQVKSDLDPKRFT
LRTVPALLTKSSAWQDYCDSERPLEQAIKRLGKSRHAA
NT seq 2637 nt NT seq  +upstreamnt  +downstreamnt
atggccgacaacctctcgaaatacagggccaagcgcgatttcaagaagacccgcgaaccg
agcggggaagcgggcgtcaaaccgtcgaaccgccggcggttcgtgatccagaagcacgat
gcgacacggcttcactatgacctcaggctcgagctcgatggcgtgttcaagtcctgggcg
gtgaccaagggaccctcgctcgatccgcatgacaaacggctcgctgtcgaggtcgaggat
cacccgctcgactacggcgacttcgaaggtacgatcccgaagggccaatatggcggcggc
acggtgatgttgtgggaccgcggttactgggagccggaaggccgcaagtctccggaagag
gctttgaggaaaggcgacttcaagttcacgcttgaaggcaagcgactgcacggcagcttc
gtcctggttcggatgcgtaatgaccgcgatggcggcaagcgcacgaattggctgctgatc
aaacatcacgacgaacattcggtcgaggaaaacggtgcggcgatcctggaggagaatgcg
acctccgtcgcatccggccgcagcatggatgagatcgccgaaggcaagggccgcaagccg
cgacctttcatgatggcgaaggcggacgtcgaggcggacgccgtgtgggacagcaagcat
ggtctggccgccgacgagcgcaagaagaagtctcctaaggatgtcgcaacctccacggcg
gccgacctgccagatttcatcgagccgcagctttgcgataggctcgatcggccacccgcc
ggcgatgattggctgcacgaaatcaagttcgacggctatcggatccagatgcgggtcgcc
gatggagaggtgacgctgaagacgcgcaagggcctcgattggacgtccaaatattctggg
attgcggaagccgcgtccggactgcccgactgcatcatcgatggcgagatctgcgcgctc
gatgagaatggcgcaccgaatttcgccgcacttcaggcggctctgtcggaaggcaagacc
ggtaacctcgtctatttcgccttcgacctgctcttcgatggcggagaggacttgcggtcg
atgcgcctgttcgagcgaaaggagcggctgcaaaaccttctcaccgctgccggcgacgat
cctcgcatccgctacgtcgaacatttccaatccggtggcgacgcggtgctgcgctccgcc
tgcaagctgcacctcgaaggagtcatctccaagcagatggacgcaccctatcagtccggc
cgcaccgacacctgggcaaagtcgaaatgtcgcgccggacacgaggtggtgatcggcggt
tatgccaagaccaacggcaggttcagatctctcctggtcggcgttcaccgcggcgatcac
tttgtctatgtcggccgtgtcggaaccggctacggcgcgaagaaagtcgaaatgctgctg
ccgaaactgaaggcgctcgagacgacgaaatcgcctttcggcggtatcggtgctccgaag
aagcaggccgaagtggtctggttgaagccggagcttgtcgccgaaatcgaatttgaaggg
tggaccacggacggcctcgtccgccaggctgccttcaaaggcctgcgcgaggacaagccg
gcgaaagaggtcgaggccgaaaagccggcgctgcctgcccagactgaaaccgcgggaccg
gccgcggctgccaaacataagtctgcccgccgcaaaggcgcgaaggccgaggtcatgggt
gttctcatttccaatcccgacaagccgctgtggccggacgccggtgatggtgagcccgtc
acaaaggaggaccttgcgcgctatcatgagaccgtcggtgcttggcttatcgagcatatc
aagggccgaccatgctcgatcattcgagcacccgacggcattggcggcgagcagttcttt
cagcgtcacgcgatgcccggcacttcgaacctgctcgaattggtgaaggttttcggggac
aagaagccttacctgcagatcgatcggatcgaggggctggcggcgatcgcccagatcggc
ggcgttgaactgcatccgtggaactgccagcccggcaagccggaagtacccggccgtctg
gtgttcgacctcgaccctggtcctgacgtgccgtttgcgacggtggtcgcagccgcccgc
cagatgcgcgaccgtctcgatgaactcggcctcgtcagcttctgcaagaccaccggtggc
aagggcttgcatgtcgtgaccccgctgaccgccaacaaacgcaaagccttgtcatgggcc
gaagccaagggctttgcccatgacgtttgccagcagatggcgcgcgacaatccagacctc
tacctgatcaagatgaccaagagtctccgtggcggcaggatcttcctcgattacctccgc
aacgatcgcatggcgacggccgttgcgccgctctccccgcgcgcccgcgccggcgccacc
gtgtccatgccgcttacctgggcgcaggtgaagtccgatctcgacccgaagcgttttacg
cttcgaacggtgccggcgcttctgaccaaaagctccgcctggcaagactattgcgacagc
gagcggccgctggaacaggcgatcaagcgtctcggaaaatcccgacacgcagcgtga

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