KEGG   Rhizobium favelukesii: LPU83_2814Help
Entry
LPU83_2814        CDS       T03046                                 

Gene name
ligD
Definition
(GenBank) DNA ligase (ATP)
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rhl  Rhizobium favelukesii
Pathway
rhl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rhl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LPU83_2814 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhl03400]
    LPU83_2814 (ligD)
Enzymes [BR:rhl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LPU83_2814 (ligD)
DNA repair and recombination proteins [BR:rhl03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LPU83_2814 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Motif
Other DBs
NCBI-ProteinID: CDM58465
UniProt: W6RDU4
LinkDB All DBs
Position
complement(2760833..2763346)
Genome map
AA seq 837 aa AA seqDB search
MALEAYQAKRNFKVTPEPRGSRRGTKSAAPAALSFVIQKHDATRLHYDFRLELDGALKSW
AITRGPSLNPDEKRLAVHVEDHPLDYGDFEGTIPKGQYGGGTVLVWDRGTWTPNGDPHKG
YKKGHLEFDLDGEKLSGRWHLVRMHGKPAERQENWLLIKAEDEEARHKGDILKQRPESVK
SGRKIEEIAKHPDATWNSRPKGTSKPTSAKPAATPAKPKRHEWPKGAEKAAMPAFVKPEL
AKLKAKPPSGEGWIHEIKFDGYRLQIRLENGRATLLTRSGLDWTEKFGQEIVDAFAALPA
KSAILDGEIVVERENGASDFSSLQNDLSQGRHDRFVFYAFDLLYLDGYGLQQVRLTSRKE
LLLGLLADADGRLRYSEHFAEKGALVLDHVRQLGLEGIISKLADSEYVSGRTGEWVKSKC
LRRQELVIGGYVPSTSMKNAIGSLAMGVNRSGKLEHVGRVGTGFSVNVAQDLYDKLSAME
QSENSFDDELTAEERRGLVYVRPELVAEVEFQAWSADGNLRHAAFRGLRDDKAPEDVMPE
ATSKTAEELPQSSVTLTHPDRIYWPEEGITKQGLASYYARVWRFIEPYVTKRPLALLRCP
DGIGGQRFFQKHAWKGMNSNIEEITDPKDRGGEKLLRIMDFDGMIALVQSAVLEIHPWGA
TTGSWERPDMITMDLDPADDVSWTDVIAAADELKERLEAVGLAAFVKTSGGKGLHVVTPL
KPKASWTQVKAFAKALADGMSKDQPDKYLATATKAKRNGKIFIDYLRNGRGNTAVAAYST
RARPGAAVSMPLEWKELTEEIGPAYFTVDNAPARLDTLRSDPWADFFAAAVPLEKQK
NT seq 2514 nt NT seq  +upstreamnt  +downstreamnt
atggctctggaggcctatcaggcaaagcgcaatttcaaggtgacgccggagccgcgagga
agccggcgtggcaccaagtctgccgcgcctgcagcgctcagcttcgtcattcagaaacac
gatgcgacgagacttcactatgacttccggcttgagctcgatggcgcgctgaagagctgg
gccatcacacgcgggccaagcctcaatcccgatgaaaagcggcttgccgttcacgtcgaa
gatcacccgctggactatggcgacttcgaaggcaccatcccgaaggggcaatatggtggc
ggcacggtgcttgtttgggatcggggaacatggacgccgaatggcgatccgcataagggc
tacaagaagggccatctggagttcgacctcgacggtgagaaactcagcggccgctggcat
ctggttcggatgcacggcaaaccggccgagagacaggagaactggctgctcatcaaggcc
gaggacgaggaagcgcgccacaagggcgacattctcaaacagcggccggaatcggtcaag
agcggccgcaagatcgaagagattgccaagcaccctgacgccacctggaactcccgcccc
aagggcacgtcaaagccgacctccgccaagcctgcagcgaccccggccaagccgaaacgc
catgagtggccgaagggagccgaaaaggccgcgatgcctgcctttgtcaagcccgagctt
gccaagctcaaggccaaaccgccgtcgggcgaagggtggatccacgaaatcaaatttgac
ggataccggctgcagatacggcttgagaatggcagggcgaccctgctcacgcgcagcggc
ctcgattggaccgagaagttcggccaagagattgtcgatgctttcgcagcactgccggcc
aagtcagcgatcctcgatggagagatcgtcgtcgagcgggaaaacggcgcctccgacttt
tcgtccctccagaacgatctcagccaagggcgtcacgatcggtttgtcttttacgccttt
gatctgctttatctcgacggatacggcctgcagcaagtccggctcaccagccgcaaggag
ttgctgttgggtctgctggcagacgctgacggaaggctccgctacagcgagcatttcgcc
gagaagggtgccttggtgctggaccatgtccgccagctcggtcttgagggcatcatttcg
aaattggcggacagcgaatatgtgtccgggcgcacgggcgaatgggtcaaatcaaaatgc
ctgcggaggcaggaactggtcatcggcggctatgtgccgtcgacctcgatgaaaaatgcg
ataggctcgcttgccatgggcgtcaaccgcagcggcaagctcgagcatgtcggcagggta
ggaacgggcttcagcgtcaatgtcgcacaagatctctatgacaagttgtcggcgatggag
cagagtgagaattcgtttgacgatgaactcactgccgaagagcgccgtgggctggtctat
gtcaggccggagctcgttgccgaggtggagtttcaggcctggtcggccgacggcaacttg
cggcatgctgcgtttcgtggcttgagggacgacaaggcgccagaggatgtgatgcccgaa
gcaacaagtaagaccgctgaggaactgcctcagtccagcgtcacgctcacccacccggat
cgcatctactggccggaggagggcatcacaaaacaggggctggccagctactatgcgcgg
gtgtggcgcttcatcgaaccctatgtcaccaagcggccgctggcgctgctgcgttgtcct
gatggtattggcggacagcggttttttcagaagcatgcctggaagggcatgaattcgaat
atcgaagagatcaccgatccgaaggacaggggcggcgagaaattgctgcgcatcatggac
ttcgacgggatgattgcgcttgtccagtccgcggtgctggagatccatccctggggtgcc
acgacaggcagttgggaacggcccgacatgatcacgatggatcttgacccggctgatgac
gtcagctggacggatgtgatcgccgccgccgatgaactgaaggagcgtctggaggcggtc
ggtctcgcggccttcgtcaagacctccggcggcaaggggctgcatgtcgtgacgccgctg
aaaccgaaggccagctggacgcaggtcaaggccttcgccaaggcgctcgccgatggtatg
tcgaaagatcagccggataaatatctggcaaccgccacgaaggcgaagcggaacggcaag
atcttcatcgactatctgcgcaatgggcgcggcaatacggccgtcgccgcctattcgacg
cgagcacgccccggcgctgccgtctccatgccgcttgagtggaaagagctgaccgaggaa
atcggtccggcctatttcacggtcgacaacgctccggcgcgtctcgataccttgcgaagc
gatccgtgggcggacttctttgccgccgccgtcccgctcgagaagcaaaaataa

DBGET integrated database retrieval system