KEGG   Rhizobium favelukesii: LPU83_pLPU83d1032Help
Entry
LPU83_pLPU83d1032 CDS       T03046                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rhl  Rhizobium favelukesii
Pathway
rhl03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rhl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    LPU83_pLPU83d1032 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhl03400]
    LPU83_pLPU83d1032 (ligD)
Enzymes [BR:rhl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LPU83_pLPU83d1032 (ligD)
DNA repair and recombination proteins [BR:rhl03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     LPU83_pLPU83d1032 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M
Motif
LinkDB All DBs
Position
pLPU83d:1027534..1030173
Genome map
AA seq 879 aa AA seqDB search
MATDTLSKYRAKRDFQKTSEPSGDTPIEKASRRRFVIQKHAASRLHYDLRLEVRGVFKSW
AVTKGPSLDPRDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMVWDRGYWEPEGQKGPE
RALEKGELKFRLDGQRLQGSFVLVRMRNDRDRGNRSNWLLIKHRDAFALEDHGSDIVEEN
QTSVASGRTMEAIASGKGRQPAAFIVKGGKVRADAVWGSDGGAPADPRRSKRQNAKRPTE
DAPAELPDFIAPQLCETVERPPSGADWVHEIKFDGYRVQMRVFDNEVTLKTRKGLDWTAK
FTEIADGASALPDAILDGEICALDEQGAPDFAALQAALSERKTGDLVFFAFDLLFDRNED
LRARPLSDRKDRLATLLNNAPSNPRIRFVEHFETGGDAVLKSACKLSLEGIVSKRADAPY
QSGRTHTWAKSKCRAGHEVVIGGYARINGRFRSLLVGVYRKDHLIYVGRVGTGFAAKKLE
GLLPELEALETARSSFTGTGSPRQDRDVVWVKPELVAEIEFAGWTADGLVRQAAFKALRK
DKPASEVEVDLPAPAAGTVTPEPGPAARQGRGKNAKVEVMGVLISSPDKPLWPDANDDGP
VTKEELARYYEAVGAWLIRHIAGRPCSIIRAPDGINGEQFFQRHAMQGTSNLLELVEVFG
DRKPYLQIDRLEGLSAVAQIAAVELHPWNCQPGKPEVPGRLVFDLDPGPDVAFSTVVAAA
REMKDRLEELGLVSFCKTTGGKGLHVVTPLAATKRKALSWPQAKAFAYDVCRQMARDNPD
LYLVKMTKSLRTGRIFLDYLRNDRMSTAVAPLSPRARAGATVSMPLTWAQVKADLDPRRF
TVRTAPRLLTKTSAWEDYCDCERPLEQAIKRLGKTRNLA
NT seq 2640 nt NT seq  +upstreamnt  +downstreamnt
atggccactgacacgttatcgaagtatcgagccaaaagagacttccaaaagacttcggag
ccgagtggcgacacgccgattgaaaaggccagccgccgacgctttgtcattcaaaagcac
gccgcctcccgcctgcactacgatctcaggctcgaagttcgcggcgtcttcaaatcctgg
gcggtcaccaaagggccgtcgcttgatccgcgtgacaagcgccttgcggttgaggtcgag
gatcatccgctcgactacggcgacttcgaaggcacgatccccaagggccagtatggtggc
ggcacggtcatggtgtgggaccgcggctactgggaaccggaggggcaaaaagggccagag
cgggcgctggaaaagggcgagttgaagttcaggctcgatggccaacgcctgcaaggaagc
ttcgttctcgtgcgcatgcgcaacgatcgagatcggggcaaccgttcgaactggctgctg
atcaaacatcgtgacgcgtttgctctggaagaccatggctccgacattgtggaggagaac
cagacttcggtggcatcgggcagaaccatggaagcgattgcctcgggcaaaggtcgacaa
ccggccgcattcatcgtcaaaggaggaaaagtgcgcgccgacgccgtgtggggaagcgat
ggcggcgcgcctgcagaccctcgcagatccaagaggcaaaacgccaagcggccaacagag
gatgcgcccgccgaactgccggactttattgcgccgcagctctgtgagacggtggaacgc
ccgccgtctggagccgattgggtccatgaaatcaaattcgacggctacagggtgcagatg
cgggtgtttgataacgaggtcacgctgaagacgaggaaaggattagattggacagcaaag
ttcaccgaaatagcggatggcgcctcggctcttccagatgccattttagacggcgagatc
tgtgcgctggatgaacagggcgcgccagatttcgccgcacttcaagccgcgctttccgaa
cgcaagaccggagatcttgttttcttcgcattcgatctgcttttcgaccgcaacgaagac
cttcgcgcgcggccactgagcgacagaaaagatcgtctcgccaccctcttgaataacgct
ccgagcaatccccggatccgttttgtggagcatttcgagaccggaggcgacgctgtattg
aagtctgcctgcaagctgtcactcgaaggcatcgtctcgaaacgggccgacgcaccgtat
caatcagggcgcacccatacgtgggccaaatcgaaatgtcgtgccgggcatgaggtcgtt
atcggcggctatgcaaggatcaacggcaggttcagatcgctactggtcggtgtttatcgc
aaagaccatctaatctatgtcggtcgcgtgggaaccggctttgcagcaaagaagctcgaa
gggctattgccggagctcgaggcgttggagacggcccgctcgagctttaccggcaccgga
tcgccgaggcaagatcgcgatgtcgtatgggtcaagcccgagcttgttgccgagattgaa
ttcgccggatggacggcagacggcctcgtgcgtcaggcagccttcaaggctctgcgcaaa
gacaagcctgcgagcgaagtcgaagtcgatctgccagccccggccgctggtacggtcaca
ccagagcctgggcccgccgccagacagggtcgcgggaaaaacgccaaggtcgaggtgatg
ggcgtgctgatttccagtcccgacaagccgctctggcctgatgccaacgacgatggcccc
gtgaccaaggaagagctggctcgctactacgaggcggtcggtgcgtggctcatcaggcat
attgccggtcgaccatgctccatcatccgtgcgccagatggcataaacggcgagcagttc
tttcagcggcacgccatgcagggcacgtcgaacctcctggagctggtcgaggtattcggc
gacaggaagccctatctccagattgatcgcctggagggattgtcggccgtcgcccagatt
gccgctgtcgaactccacccctggaattgccaaccgggtaagccggaagtcccgggacga
ttggtcttcgacctcgatccgggacctgacgtcgcgttctcgactgtcgttgccgccgcc
cgggaaatgaaggacaggctcgaggaactgggcctggtgagcttctgcaagaccaccgga
ggcaaggggctgcatgtcgtcacaccgcttgccgcgaccaagcgaaaggctctctcatgg
ccgcaagcaaaggcctttgcatatgatgtatgccggcaaatggcgcgcgacaatccggat
ctctatctggtgaaaatgacgaaaagcctgaggaccggtcgaattttcctcgactacctg
cgcaacgatcgcatgtccaccgcggttgctcccttgtcgccacgagccagggccggcgcc
acggtatcgatgccgctcacctgggcacaggtgaaggccgatctcgatcccagacgcttc
accgttcgaacggcaccgcgcctgctgacgaagacatcagcatgggaggattactgcgat
tgcgagcggccgctggagcaagccataaagcggctcggcaaaacccggaatttggcgtga

DBGET integrated database retrieval system