KEGG   Rhodovulum sp. MB263: B5V46_15615Help
Entry
B5V46_15615       CDS       T04771                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rhm  Rhodovulum sp. MB263
Pathway
rhm03030  DNA replication
rhm03410  Base excision repair
rhm03420  Nucleotide excision repair
rhm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rhm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B5V46_15615
   03410 Base excision repair
    B5V46_15615
   03420 Nucleotide excision repair
    B5V46_15615
   03430 Mismatch repair
    B5V46_15615
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rhm03032]
    B5V46_15615
   03400 DNA repair and recombination proteins [BR:rhm03400]
    B5V46_15615
Enzymes [BR:rhm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     B5V46_15615
    6.5.1.6  DNA ligase (ATP or NAD+)
     B5V46_15615
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     B5V46_15615
DNA replication proteins [BR:rhm03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    B5V46_15615
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     B5V46_15615
DNA repair and recombination proteins [BR:rhm03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     B5V46_15615
   NER (nucleotide excision repair)
    Other NER factors
     B5V46_15615
   MMR (mismatch exicision repair)
    Other MMR factors
     B5V46_15615
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: ARC89928
UniProt: A0A1V0I1A0
LinkDB All DBs
Position
3372537..3374210
Genome map
AA seq 557 aa AA seqDB search
MKRFAALYTALDRTPRTTAKVAALAAYLTEAPEPDRLWTVALLSGRRPRRAVTATRLREW
AAERAGLPLWLFEECYPVVGDLAETIALVLPPPGTGSDRSLSARMTDILAMAAMDEPARK
AAILDAWDNLGGPERFLFTKLLTGGFRVGVSQTLMTRALARATGQDEAELAHRLMGDWTP
ATTSWQTLIEAPDPAAALSRPYPFYLAYQIEGPPEALGVPADWIAEYKWDGIRGQLIARG
GTHFLWSRGEDLITGRFPELAVARDFLPAGTVLDGEILAWKDGRPLPFAALQTRIGRKTV
SKRLLAETPAAFIAYDLLEDGGTDLRPRPLAERRARLEEIIAGGPPGGPLRLSPRLSFGT
WEDLARIRETARKAEAEGVMLKRAGAPYLAGRRKGDWWKWKLDPLTVDAVMIYAQAGHGR
RATLYTDFTFAVRDGDALVPVTKAYSGLTDAEFRDITAWVRKNTLQRFGPVRQVAPELVF
EIAFEGIRASPRHKSGLALRFPRMARWRRDKPASEANTLDDLKTLLATRERGAREPKNSP
ALEPPPPGTLSLDQDNE
NT seq 1674 nt NT seq  +upstreamnt  +downstreamnt
atgaagcgcttcgccgctctctataccgcgctcgaccgcaccccccgcaccaccgccaag
gtcgcggcgctggccgcctatctcaccgaggcgcccgagcccgaccggctctggaccgtg
gcgcttctgtcgggacggcgaccgcgccgggcggtgaccgcgacgcggctgcgggaatgg
gcggccgagcgggcgggcctgccgctctggctgttcgaggaatgctatccggtggtgggc
gatctggccgagaccatcgcgctggtcctgcctccgcccggcacgggcagcgaccggagc
ctgtcggcacggatgaccgacatcctcgccatggccgcgatggacgagcctgcccgaaag
gccgcgatccttgacgcctgggacaatctcggcgggcctgagcggtttctgttcaccaag
ctgctgaccggcgggtttcgcgtcggcgtcagccagaccctgatgacccgcgcgctggcc
cgcgccaccgggcaggacgaggccgagctggcgcaccggctgatgggcgactggaccccc
gcgacgacaagctggcagacgctgatcgaggcgcccgacccggcggcggcgctgtcgcgc
ccctatcccttctatctggcctatcagatcgagggcccgcccgaggcgttgggcgtgccc
gccgactggatcgccgaatacaagtgggacggcatccgcggccagctgatcgcacgcggc
ggaacgcatttcctctggtcgcgcggcgaggatctgatcaccgggcgcttccccgaactg
gccgtcgcccgcgatttcctgcccgcaggcaccgtgctcgacggcgagatcctggcctgg
aaggatggccgtcccctgcccttcgccgcgctccagacccggatcgggcggaagaccgtg
tcgaaacggctgctggccgagaccccggccgcattcatcgcctatgatctgctggaagac
ggtggcaccgacctccgcccccgcccgctggccgagcgccgcgcccggctcgaagagatc
atcgcaggggggccgcccggcgggccgctgcgcctgtcgcccaggctgtccttcgggacc
tgggaagatctggcccggatccgcgaaaccgcgcgcaaggccgaggcagagggcgtgatg
ctgaaacgcgcgggcgccccctatctggccggacgcaggaaaggcgactggtggaaatgg
aagctcgacccgctgaccgtcgacgcggtgatgatctatgcccaggcaggccacgggcgg
cgcgcgacgctttacaccgatttcaccttcgcggtccgggacggcgatgcgctggtgccg
gtaaccaaggcctattccggcctcaccgacgcggaattccgcgatatcaccgcctgggtg
cgcaagaacacgcttcagcgcttcggcccggtgcggcaggtggcgcccgaactggtcttc
gagatcgccttcgagggcatccgcgccagcccgcgccacaagtcgggccttgccctgcgc
tttcctcggatggcgcgctggcggcgcgacaagcccgcgtcagaagccaatacgctcgac
gatctgaagaccctgctggcgacgcgcgagcggggcgcgcgcgagccgaaaaacagcccc
gcgcttgaacctccgccccccggtactctatctctggatcaagacaacgaatga

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