Rhodobacter sp. LPB0142: LPB142_04445
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Entry
LPB142_04445 CDS
T04631
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rhp
Rhodobacter sp. LPB0142
Pathway
rhp03030
DNA replication
rhp03430
Mismatch repair
rhp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rhp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPB142_04445
03430 Mismatch repair
LPB142_04445
03440 Homologous recombination
LPB142_04445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rhp03032
]
LPB142_04445
03400 DNA repair and recombination proteins [BR:
rhp03400
]
LPB142_04445
Enzymes [BR:
rhp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LPB142_04445
DNA replication proteins [BR:
rhp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LPB142_04445
DNA repair and recombination proteins [BR:
rhp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LPB142_04445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AOZ68658
UniProt:
A0A1D9MA30
LinkDB
All DBs
Position
900262..903765
Genome browser
AA seq
1167 aa
AA seq
DB search
MVQPRFIHLRVHTQYSLLEGAVPVKKLIKMCDAANMPAVAITDTNAMFAALEFSVLAKGD
GLQPIVGCQISVAYDPAQPGEKPRPPAPVVLLSQTEAGYMNLMRLSSCLYVDKHGAAAEV
TLEQLEEFSEGLICLSGGADGPVGRFLQAGQPGKARLLLERLARIYPDRLYVELQRHPGE
GGQLPEGERMTERPFLEMAYDMGLPIVATNDVYFPKADMFEAHDALICIAEGAYVDQIEP
RRRLTPQHYFKSEAEMCALFADLPEALANTVEIAKRCAFATYKRNPILPKFADDEVEELR
RQAWEGLRARLAVIEHAVPVEEYEARLKFELGIIEQMGFPGYFLIVADFIKWSKDNGIPV
GPGRGSGAGSLVAYALTITDLDPLRYSLLFERFLNPERVSMPDFDIDFCMDRREETIRYV
QEKYGRDKVGQIITFGALLSKAAVRDVGRVLQMSYGQVDKLSKMIPVEGVKPVSIEKALA
DEPRLREAAREEEVVKRLLGYAQQIEGLLRNASTHAAGVVIGDRPLDRLVPLYQDPRSDM
PATQFNMKWVEQAGLVKFDFLGLKTLTVIQSAMNLIFKSGRPLHVGPDGTELYQPAEGAA
NQINAIPLDDEKTYRLYAEARTVAVFQVESEGMKSALRQMKPTCIEDIVALVALYRPGPM
ENIPTYCEVKHGLKPLASLHPTIDPILAETQGIIVYQEQVMQIAQVMAGYTLGGADLLRR
AMGKKIAEEMAKERPKFVEGAKKTHNVDEKKAGEVFDLLEKFANYGFNKSHAAAYAVVSY
YTAWLKANHPVEFMGGVMNCDIHLTDKLAIYAQEVKKELGAEIVPPCVNRSLATFDVVDQ
KLVYALGALKNVGVEAMQLIVQARGDRAFRDLSDFARRVDMKRVGKRPLEMLARAGAFDE
LDPNRKRVFQSLEGLMAWSAAVAEAKASAQVSLFGEAGDDLPPPRMADTDDWLPGERLAE
EHKAIGFYLSGHPLEDYLPALKRKKVMTLEEVQAKAVGGPFFAKIAGEVASVREKKSAKG
NRFAFVALSDTSGPYEATFFSDALEASRGVLEAGRLVVLNVKVEVEGESVRMLAQSAVAV
ESVTADAGGAGLMIHVEGAEAVGSIAALLERLEAEGKVRSRGPISFTVFDPERGCRYQLS
AGRDYPVNPQIKGAIRSLRGVAMVEEV
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atggtccagccccgattcatccacctgcgcgtgcacacgcaatattcgctgcttgagggc
gccgtgcccgtcaagaagctgatcaagatgtgcgacgccgcgaatatgcccgccgtcgcc
atcaccgataccaatgcgatgttcgcggcgctcgaattttccgttctggcgaaaggggat
gggttgcagccgatcgtgggctgccagatctcggtggcctatgacccggcccagcccggc
gaaaagccgcgcccgccggcgccggtggttctgctgtcgcagaccgaggcgggctacatg
aacctgatgcggctctcgagctgtctttacgtcgacaaacatggcgcggcggcggaggtc
acgctcgaacagctcgaggagttttccgaggggctgatctgtctctcggggggcgccgac
gggccggtggggcggttcttgcaggccggccagccgggcaaggcgcggctccttctcgag
cggctcgcccgcatctaccccgaccggctctatgtcgagctgcagcgccacccgggcgag
ggcgggcagctccccgagggcgagcggatgaccgagcggccgttcctcgagatggcctat
gacatgggcctgccgatcgtggcgaccaatgatgtctacttccccaaggccgatatgttc
gaggcgcatgatgcgctgatctgtatcgccgagggcgcctatgtcgaccagatcgagccg
cgcaggcgcctgacgccgcagcattatttcaaatccgaggcggagatgtgcgcgctcttc
gccgatctgccggaggcgctcgccaataccgtcgagatcgcgaagcgctgcgctttcgcg
acctacaagcgcaacccgatcttgccgaaattcgccgatgacgaggtcgaggagctccgc
cgccaggcctgggaggggctgcgcgcgcggcttgcggtgatcgaacatgcggtgccggtc
gaggagtatgaggcgcggctcaagttcgagctcggcatcatcgagcagatgggcttcccc
ggctacttcctgatcgtggccgatttcatcaaatggtcgaaggataacggcatcccggtc
ggccccgggcggggctcgggggcgggctcgcttgtggcttatgcgctgaccatcaccgac
ctcgacccgttgcgctattcgctgctcttcgagcgcttcctgaaccccgaacgggtctcg
atgcccgacttcgacatcgacttctgcatggaccggcgcgaggaaacgatccgctatgtg
caggagaaatatggccgcgacaaggtcggccagatcatcaccttcggcgcgcttctctcg
aaggcggcggtgcgcgacgtggggcgcgtgttgcagatgtcttacgggcaggtcgacaag
ctctcgaagatgatcccggtcgagggggtgaagccggtttcgatcgagaaggcgctggcc
gatgagccgcggctgcgcgaggccgcgcgcgaggaggaggtggtcaagcgcctcctcggc
tatgcccagcagatcgaggggctcttgcgcaacgcctcgacccacgccgcgggggtggtg
atcggggatcggccgctcgaccggctggtgccgctctatcaggacccgcgctcggacatg
cccgcgacgcagttcaacatgaaatgggtcgagcaggcggggctcgtgaagttcgacttt
ctcgggctgaagacgctgaccgtcatccaatcggcgatgaacctgatcttcaaatcgggg
cggcctttgcatgtgggccccgatggcaccgagctttaccagcccgccgagggcgccgcg
aaccagatcaacgcgattccgctcgatgatgagaagacctatcggctttacgccgaggcg
cgcacggtcgcggtgttccaggtcgaatccgaggggatgaaatcggcgctcaggcagatg
aagccgacctgtatcgaggatatcgtggcgctcgtggcgctttaccgccccggcccgatg
gaaaacatcccgacctattgcgaggtgaaacacgggctgaagccgctggcctcgctgcac
cccacgatcgacccgatcctggccgagacgcagggcatcatcgtctatcaggaacaggtg
atgcagatcgcgcaggtcatggcgggctatacgctcggcggcgccgacctgttgcgccgc
gcgatgggcaagaagatcgccgaggaaatggccaaggagcgcccgaaattcgtcgagggc
gccaagaagacccataatgtcgatgaaaagaaggcgggcgaagtctttgaccttcttgag
aaattcgcgaactacgggttcaacaaatcgcatgccgcggcctatgcggtggtgtcttat
tacaccgcctggctgaaggcgaaccaccctgtcgaattcatgggcggggtgatgaactgc
gatatccatctcaccgacaagctcgcgatctacgcgcaggaggtgaagaaggagctcggc
gccgagatcgtgccgccctgtgtgaaccggtctctggcgaccttcgatgtggtcgatcaa
aagctcgtctatgcgctcggcgcgctgaagaacgtgggcgtcgaggcgatgcagctgatc
gtgcaggcccgcggtgaccgggcgttccgcgacctgagcgattttgcgcgccgggtcgat
atgaagcgggtgggcaagcgccccttggagatgttggcgcgggcgggggcttttgatgag
ctcgacccgaaccgcaagcgggtgttccagagcctcgaggggctgatggcctggtcggcg
gcggtggccgaggccaaggcctcggcgcaggtctcgctttttggcgaggcgggcgatgat
ctgccgccgccgcggatggccgacaccgatgactggctgcccggcgagcggctcgccgag
gaacacaaggcgatcggcttctatctctccggccacccgctcgaggattacctgcccgca
ttgaagcgcaagaaggtgatgacgctcgaggaggtgcaggccaaggccgtgggcgggccg
ttctttgccaagatcgcgggcgaggtcgcctcggtgcgcgagaagaaatcggccaagggc
aaccgctttgcctttgtcgcgctctccgatacctcggggccctatgaggcgacgttcttc
tccgatgcgctggaggcctcgcgcggggtgctcgaggcggggcggctcgtggtgctcaat
gtcaaggtcgaggtcgagggcgaatcggtgcggatgctggcgcaatcggcggtcgcggtg
gaaagcgtcaccgccgatgccggcggcgcggggctgatgatccatgtcgagggggcggag
gcggtgggctcgatcgcggcgctgctcgagcggctcgaggcggagggcaaggtgcgctcg
cgcgggccgatctccttcaccgtcttcgaccccgaacgcggctgccgctatcagctcagc
gccgggcgcgattacccggtcaacccgcagatcaagggcgcgatccgctcgctgcgcggc
gtggcgatggtcgaggaggtctga
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