KEGG   Rhodococcus sp. p52: IM25_10720Help
Entry
IM25_10720        CDS       T05434                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rhq  Rhodococcus sp. p52
Pathway
rhq03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rhq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    IM25_10720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhq03400]
    IM25_10720
Enzymes [BR:rhq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IM25_10720
DNA repair and recombination proteins [BR:rhq03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     IM25_10720
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S Big_4
Motif
Other DBs
NCBI-ProteinID: AOD22023
UniProt: A0A1B2UCZ2
LinkDB All DBs
Position
2294959..2297337
Genome map
AA seq 792 aa AA seqDB search
MPTRTIDGHRITLTNLDKVLYPRTGTTKGEVVEYYEAVAEAMLPHIVGRAATRNRWPNGV
GEQSFFEKNLPDHAPAWLDRRTLHHKDRRVTYPLFDSAAGLVWLGQQAALELHVHQWRFD
GEKAGPATRIVFDLDPGPGVGLAECAEVARHVRDTVAELGWSAYPVTSGSKGIHLYVPLD
RMLSSSGASKVAKQVARNLETTLPDLVTATMAKSAREGKVFVDWSQNNSSKTTVAPYSLR
GRDEPWVAAPRSWDELDDPDLAQLQFREVLARIEEFGDLLAGLDPPLGKAGSGDSGDKAG
SGGKAGSGDALDTYRGKRDASRTPEPVPDRVPEDGPGNRFVIQEHHARRLHYDLRLERDG
VLASWAVPKNLPDTSGRNNLAVRTEDHPIEYLTFHGTIPKDEYGAGSMTVWDTGTYETEK
WRDDEGIVRFHGDRIEGRYALIRTEKNQWLAHRMKDQSSPSTESSDADPASLVGSSGSKA
FPRDLAPMLATSGDVSGLDAEDWAFEGKWDGYRAIAEIEDGTVRLRSRSGRDVTGDYRKL
VELATILDGHRAVLDGEIVAVDRSGVTSFSMLQRGVNYEYRVFDVLYLDGVSLLRKTYDD
RRRVLEALAAATDGLIVPDLLSGDGSKALARSRAKNWEGVVAKRRDSVYLPGKRGAGWIK
SKNWLTQTVVLGGYRRGNGNRASTFGSLLLGVYDDDGEFVYVGKVGTGFDDETLLSVTKA
VKGRTSRTNPFANEVPAAERRDAVWLRPELVGEVRFGGWTEGDRVRHASWRGLRDDVDAS
SVVREEETGADC
NT seq 2379 nt NT seq  +upstreamnt  +downstreamnt
atgccgacccggacgatcgacggtcaccgcatcaccctgacgaacctcgacaaggtgctg
tatccgcgcaccgggacgacgaagggcgaggtcgtcgagtattacgaagccgtcgccgag
gcgatgcttccccatatcgtcggccgggccgcgacccgcaaccggtggccgaacggtgtc
ggcgaacagtccttcttcgagaagaacctccccgaccacgcaccggcctggctcgaccgt
cgcaccctgcatcacaaggaccggcgggtcacctacccgctgttcgattccgccgccggg
ctcgtctggctcgggcaacaggcagccctcgaactccacgtgcaccagtggcgtttcgac
ggagagaaggccggacccgcgacccgcatcgtcttcgacctcgacccggggcccggcgtg
ggcctggccgagtgtgcggaggtcgcgcgccatgtgcgcgacaccgtcgccgaactcggg
tggtcggcctatccggtcaccagcggcagcaagggcatccacctgtacgtcccgctcgat
cggatgctgtcgtcgtcgggggcgtcgaaggtcgcgaagcaggtcgcgcgcaatctcgag
accacccttcccgacctggtgaccgcgacgatggcgaaatcggcgcgcgagggcaaggtc
ttcgtcgactggagccagaacaacagttccaagacgacggtcgcgccgtactcgctgcgc
ggtcgcgacgagccgtgggtagcggcgccgcgcagctgggacgaactcgacgaccccgac
ctcgcgcaactgcagttccgggaggtcctcgcccgcatcgaggagttcggggacctgctc
gccggtctcgacccgcccctcggcaaggccgggtccggagattccggagataaggccggg
tccggcggtaaggccgggtctggagacgccctggacacctaccgcggcaagcgcgacgcg
tcgcgcaccccggaaccggtacccgaccgcgtccccgaggacggccccggcaacaggttc
gtcatccaggagcaccacgcgcgtcgcctgcactacgacctgcgcctcgaacgcgacggt
gtgctggcctcgtgggccgtaccgaagaacctgccggacacctcggggcgcaacaatctc
gcggtacggaccgaggaccacccgatcgagtacctgaccttccacgggacgatcccgaag
gacgaatacggcgccggcagcatgaccgtgtgggacaccggcacctacgagaccgagaag
tggcgggacgacgaggggatcgtgcggttccacggcgaccggatcgagggacggtacgcg
ctgatccgcaccgagaagaaccagtggctggcgcaccgcatgaaggaccagtcgtcgccg
agcaccgagtcgtccgatgccgatccggcctccctcgtcggatcgtcggggtccaaggcc
ttcccgcgcgatctcgcgcccatgctcgcgacctccggtgacgtctcgggtctcgacgcc
gaagactgggcgttcgaaggcaaatgggacggataccgcgccatcgcggagatcgaggac
ggcaccgtcaggctccgcagccgatccggtcgcgatgtcaccggcgactaccggaagctc
gtcgaactcgcgacgatcctcgacggtcaccgggcggtgctcgacggggagatcgtcgcc
gtggaccgctccggggtgacgagcttctcgatgctgcagcggggcgtgaactacgagtac
cgcgtgttcgacgtgctgtatctcgacggggtgtcgctgctgcgcaagacctacgacgat
cgccgacgggtcctcgaggcgctcgccgctgccacggacggactgatcgtcccggatctg
ctctcgggtgacggctcgaaggctctcgcgcgcagccgcgcgaagaactgggagggcgtg
gtcgccaaacgccgggactccgtgtatctgccgggcaagcgcggcgccggatggatcaaa
tcgaagaactggctcacccagaccgtcgtgctcggcggataccgccgtggcaacggcaac
cgtgcctcgaccttcggctccctgctgctcggcgtctacgacgacgacggtgagttcgtg
tacgtcggcaaggtcggcaccggtttcgacgacgagacgctcctgtcggtgacgaaggct
gtgaaagggcgcacgagccgcacgaacccgttcgcgaacgaagtgccggccgccgaacgc
cgcgatgcggtgtggttgcggcccgaactcgtgggggaggtgcggttcggaggatggacg
gaaggagaccgggtgcggcacgcgagctggcgtggtctgcgcgacgatgtggacgcgtcg
agtgtggtgcgagaagaggaaacaggcgctgactgctaa

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