Rhizobium sp. 11515TR: CKA34_01630
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Entry
CKA34_01630 CDS
T06097
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhr
Rhizobium sp. 11515TR
Pathway
rhr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CKA34_01630 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhr03400
]
CKA34_01630 (ligD)
Enzymes [BR:
rhr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CKA34_01630 (ligD)
DNA repair and recombination proteins [BR:
rhr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CKA34_01630 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ASW04730
UniProt:
A0A248W2G2
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All DBs
Position
complement(334759..337392)
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AA seq
877 aa
AA seq
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MADTLSKYRAKRDFKKTSEPSGEAHVKPSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRTSPEE
ALKKGDFKFTLDGKRLHGSFVLVRMRRDRDRRTRTNWLLIKHHDDYSVEENGAAILEENA
ISVASGRSMQQIAEGRGRKPQPFMTANADVEADAVWDSKHGLAAGERKKRSRKDVATSTA
VDLPDFIAPQLCERVARPPVGKSWLHEIKFDGYRIQMRIADGAVKLKTRKGLDWTAKYPE
IAKSASALPDCIIDGEICALDENGAPDFAALQAALSEGKTDDLVYFAFDLLFDGAEDLRS
IPLVERKERLQNLLAEASSDPRIRYVEHFETGGDAVLRSACKLSLEGIVSKQMDALYRSG
RTETWVKSKCRAGHEVVIGGYAKTNGKFRSLLVGVHRGDQFVHVGRVGTGYGAKKVETLL
PRLKALETAKSPFTGGAPKKQGEVVWVKPELVAEIEFEGWTADGLVRQAAFKGLREDKPA
KEVEAEKPASPGGTETAQPAATAKHKPLRRKTAKAEVMGVLISNPDKRLWPDANDGEPVT
KEELARYHEAVGAWLIEHIKGRPCSIIRAPDGIEGEQFFQRHAMPGTSNLIELVKVFGDK
KPYLQIDRIEGLAAIAQIGGIELHPWNCQPGKPEVPGRLVFDLDPGPDVLFSSVVAAARE
MRDRLDELGLISFCKTTGGKGLHVVTPLAINKRKPLTWVEAKGFAHDLCEDMARDNPDLY
LIKMTKSLRGGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLNWTQVKADLDPKRFTI
RTVPALLAKSPAWQDYCDGERPLEQAIKRLGKSKRAA
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atggccgacactctttcgaaatatcgtgccaagcgcgatttcaagaagaccagcgaacca
agcggggaggctcatgtcaaaccgtcgaaccgccggcggttcgtcatccaaaagcatgat
gccacccggctgcattacgatcttcgcctggaactcgacggcgtctttaaatcctgggcg
gtgacgaaggggccatcgctcgatccgcacgacaagcgtctggcggtcgaagtggaagac
catccgctcgactatggcgatttcgagggcacgatccccaaggggcaatatggcggaggg
accgtgatgctgtgggatcgcggctactgggaacccgaaggcaggacgtcgcccgaggaa
gctctgaaaaaaggtgacttcaagttcacgctggacggcaagcggcttcatggcagtttc
gtcctggtccggatgcgccgggaccgggaccgccgcacgcgaaccaactggctgctgatc
aagcatcatgacgactactcggtggaggagaacggcgctgccatcctggaagagaatgcg
atctcggttgcctctggccgcagcatgcagcaaatcgccgagggcaggggccgcaaaccg
cagcccttcatgacggcgaatgcagatgtggaggcagatgcggtctgggacagcaagcat
ggcctagcggccggcgagcgcaagaagcggtcgcgcaaggatgttgcgacctccactgct
gttgatctgcccgacttcatagctccgcaactgtgcgaaagggttgctcgaccgcccgtc
ggcaagagttggctgcatgagatcaagttcgatggctaccgtatccaaatgcgcattgcc
gatggggcggtgaagctgaagacgcgcaaaggtctcgactggacggcaaaataccccgag
atcgccaagtcggcgtcagcacttcccgattgcattatcgatggcgagatctgcgcactc
gatgagaacggcgcaccggattttgccgcgctccaggcggctttgtcggaaggcaaaacg
gatgacctcgtctatttcgcgttcgatctgctgttcgatggcgccgaggacttgcggtct
atacctctggtggagcggaaggagcggctgcaaaaccttcttgccgaagcgagcagcgat
ccccgcatccgctatgtcgaacatttcgaaaccggcggcgatgcggtgctccgctctgcc
tgcaagctgtcgctcgaaggcatagtctccaagcagatggatgcactctatcggtccggc
cggaccgaaacctgggtaaagtcgaaatgccgggcgggccatgaagtggtcatcggtggc
tatgccaaaaccaatggcaaattccgctcccttttggttggcgtccaccgtggagaccag
tttgtccatgtcgggcgcgtcgggaccggctatggcgccaagaaagtggagacgctgctt
ccaaggctgaaggcactggagacggcgaaatcgccgttcaccggcggtgctccgaagaag
cagggtgaagtggtctgggtaaagccggaactcgtcgccgaaatcgaattcgagggctgg
accgccgacggactcgtccggcaggccgccttcaagggtctgcgtgaagacaagccggca
aaagaggtcgaggccgagaagccggcatcgccgggcgggacggagaccgcccagcctgcc
gcaaccgccaaacataagcctctccgccgcaaaaccgcgaaggccgaggtcatgggagtc
ctcatctccaatcccgacaagcggctgtggccggatgccaatgacggagagcccgtcacc
aaggaagagctggcgcgctatcatgaagctgtcggcgcctggctcatcgagcatattaag
ggccggccgtgttcgatcattcgcgcacccgatggtatcgagggagaacagttcttccag
cggcatgcgatgccaggtacctcgaaccttatcgagctggtgaaagtgttcggcgacaag
aagccttacctgcagatcgaccggatcgaggggctggccgccatcgcccagatcggtggt
atcgaactgcatccctggaattgtcagcccggcaaaccggaagtacctggacgtctggtg
ttcgatcttgatcccgggcccgatgtgctgttttcgagcgttgttgccgcggcgcgcgag
atgcgcgaccggctggatgagctcggtctcatcagtttctgcaagacgaccggaggcaag
ggtctgcacgtcgtgacaccgctggcaatcaacaagcgcaaacctttgacctgggtggag
gcaaaaggcttcgcccacgatctctgcgaagacatggcgcgtgacaatcccgatctctat
ctgatcaagatgaccaagagccttcggggtggccggatcttccttgattacctgcgcaac
gaccgcatggcgaccgccgtcgcaccgctctcaccgcgggctcgccccggcgccaccgtc
tcgatgccgctcaactggacgcaggtaaaggccgatctcgacccgaaacgctttacgatc
cgaacggtgccggcgctacttgccaagagcccggcctggcaggactattgtgacggcgag
cggccgcttgagcaggcgatcaagcgcctcggaaaatcaaagcgtgcggcgtga
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