KEGG   Rhizobium sp. 11515TR: CKA34_01630
Entry
CKA34_01630       CDS       T06097                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rhr  Rhizobium sp. 11515TR
Pathway
rhr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rhr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CKA34_01630 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhr03400]
    CKA34_01630 (ligD)
Enzymes [BR:rhr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CKA34_01630 (ligD)
DNA repair and recombination proteins [BR:rhr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CKA34_01630 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: ASW04730
UniProt: A0A248W2G2
LinkDB
Position
complement(334759..337392)
AA seq 877 aa
MADTLSKYRAKRDFKKTSEPSGEAHVKPSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRTSPEE
ALKKGDFKFTLDGKRLHGSFVLVRMRRDRDRRTRTNWLLIKHHDDYSVEENGAAILEENA
ISVASGRSMQQIAEGRGRKPQPFMTANADVEADAVWDSKHGLAAGERKKRSRKDVATSTA
VDLPDFIAPQLCERVARPPVGKSWLHEIKFDGYRIQMRIADGAVKLKTRKGLDWTAKYPE
IAKSASALPDCIIDGEICALDENGAPDFAALQAALSEGKTDDLVYFAFDLLFDGAEDLRS
IPLVERKERLQNLLAEASSDPRIRYVEHFETGGDAVLRSACKLSLEGIVSKQMDALYRSG
RTETWVKSKCRAGHEVVIGGYAKTNGKFRSLLVGVHRGDQFVHVGRVGTGYGAKKVETLL
PRLKALETAKSPFTGGAPKKQGEVVWVKPELVAEIEFEGWTADGLVRQAAFKGLREDKPA
KEVEAEKPASPGGTETAQPAATAKHKPLRRKTAKAEVMGVLISNPDKRLWPDANDGEPVT
KEELARYHEAVGAWLIEHIKGRPCSIIRAPDGIEGEQFFQRHAMPGTSNLIELVKVFGDK
KPYLQIDRIEGLAAIAQIGGIELHPWNCQPGKPEVPGRLVFDLDPGPDVLFSSVVAAARE
MRDRLDELGLISFCKTTGGKGLHVVTPLAINKRKPLTWVEAKGFAHDLCEDMARDNPDLY
LIKMTKSLRGGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLNWTQVKADLDPKRFTI
RTVPALLAKSPAWQDYCDGERPLEQAIKRLGKSKRAA
NT seq 2634 nt   +upstreamnt  +downstreamnt
atggccgacactctttcgaaatatcgtgccaagcgcgatttcaagaagaccagcgaacca
agcggggaggctcatgtcaaaccgtcgaaccgccggcggttcgtcatccaaaagcatgat
gccacccggctgcattacgatcttcgcctggaactcgacggcgtctttaaatcctgggcg
gtgacgaaggggccatcgctcgatccgcacgacaagcgtctggcggtcgaagtggaagac
catccgctcgactatggcgatttcgagggcacgatccccaaggggcaatatggcggaggg
accgtgatgctgtgggatcgcggctactgggaacccgaaggcaggacgtcgcccgaggaa
gctctgaaaaaaggtgacttcaagttcacgctggacggcaagcggcttcatggcagtttc
gtcctggtccggatgcgccgggaccgggaccgccgcacgcgaaccaactggctgctgatc
aagcatcatgacgactactcggtggaggagaacggcgctgccatcctggaagagaatgcg
atctcggttgcctctggccgcagcatgcagcaaatcgccgagggcaggggccgcaaaccg
cagcccttcatgacggcgaatgcagatgtggaggcagatgcggtctgggacagcaagcat
ggcctagcggccggcgagcgcaagaagcggtcgcgcaaggatgttgcgacctccactgct
gttgatctgcccgacttcatagctccgcaactgtgcgaaagggttgctcgaccgcccgtc
ggcaagagttggctgcatgagatcaagttcgatggctaccgtatccaaatgcgcattgcc
gatggggcggtgaagctgaagacgcgcaaaggtctcgactggacggcaaaataccccgag
atcgccaagtcggcgtcagcacttcccgattgcattatcgatggcgagatctgcgcactc
gatgagaacggcgcaccggattttgccgcgctccaggcggctttgtcggaaggcaaaacg
gatgacctcgtctatttcgcgttcgatctgctgttcgatggcgccgaggacttgcggtct
atacctctggtggagcggaaggagcggctgcaaaaccttcttgccgaagcgagcagcgat
ccccgcatccgctatgtcgaacatttcgaaaccggcggcgatgcggtgctccgctctgcc
tgcaagctgtcgctcgaaggcatagtctccaagcagatggatgcactctatcggtccggc
cggaccgaaacctgggtaaagtcgaaatgccgggcgggccatgaagtggtcatcggtggc
tatgccaaaaccaatggcaaattccgctcccttttggttggcgtccaccgtggagaccag
tttgtccatgtcgggcgcgtcgggaccggctatggcgccaagaaagtggagacgctgctt
ccaaggctgaaggcactggagacggcgaaatcgccgttcaccggcggtgctccgaagaag
cagggtgaagtggtctgggtaaagccggaactcgtcgccgaaatcgaattcgagggctgg
accgccgacggactcgtccggcaggccgccttcaagggtctgcgtgaagacaagccggca
aaagaggtcgaggccgagaagccggcatcgccgggcgggacggagaccgcccagcctgcc
gcaaccgccaaacataagcctctccgccgcaaaaccgcgaaggccgaggtcatgggagtc
ctcatctccaatcccgacaagcggctgtggccggatgccaatgacggagagcccgtcacc
aaggaagagctggcgcgctatcatgaagctgtcggcgcctggctcatcgagcatattaag
ggccggccgtgttcgatcattcgcgcacccgatggtatcgagggagaacagttcttccag
cggcatgcgatgccaggtacctcgaaccttatcgagctggtgaaagtgttcggcgacaag
aagccttacctgcagatcgaccggatcgaggggctggccgccatcgcccagatcggtggt
atcgaactgcatccctggaattgtcagcccggcaaaccggaagtacctggacgtctggtg
ttcgatcttgatcccgggcccgatgtgctgttttcgagcgttgttgccgcggcgcgcgag
atgcgcgaccggctggatgagctcggtctcatcagtttctgcaagacgaccggaggcaag
ggtctgcacgtcgtgacaccgctggcaatcaacaagcgcaaacctttgacctgggtggag
gcaaaaggcttcgcccacgatctctgcgaagacatggcgcgtgacaatcccgatctctat
ctgatcaagatgaccaagagccttcggggtggccggatcttccttgattacctgcgcaac
gaccgcatggcgaccgccgtcgcaccgctctcaccgcgggctcgccccggcgccaccgtc
tcgatgccgctcaactggacgcaggtaaaggccgatctcgacccgaaacgctttacgatc
cgaacggtgccggcgctacttgccaagagcccggcctggcaggactattgtgacggcgag
cggccgcttgagcaggcgatcaagcgcctcggaaaatcaaagcgtgcggcgtga

DBGET integrated database retrieval system