KEGG   Rhizobium sp. NT-26: NT26_2902Help
Entry
NT26_2902         CDS       T04765                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rht  Rhizobium sp. NT-26
Pathway
rht03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rht00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    NT26_2902
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rht03400]
    NT26_2902
Enzymes [BR:rht01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NT26_2902
DNA repair and recombination proteins [BR:rht03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     NT26_2902
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: CCF20626
UniProt: L0NII4
LinkDB All DBs
Position
2817399..2819939
Genome map
AA seq 846 aa AA seqDB search
MALEAYNEKRDFKASPEPKGRKVKSGGNSFVIQKHAARRLHYDFRLEMDGVLKSWAVTRG
PSLVPGEKRLAVHVEDHPLDYGDFEGTIPQGNYGAGSVLLWDRGTWHPIGDQKRGYSKGH
MEFELKGEKLEGRWHLVRMANRRGEKRENWLLIKGEDEFARAEGDADILEELPKSVKTGR
LLEELQGGTKAKAKRKTPPKTSDPSPSDEALNGPVKNNSLPKLKGAKKAELPDFVTPQLA
TLVKSAPSGKRWIHEIKLDGYRVQARIDGGDVKLLTRTGLDWTHKFGDAIVDALKRLPVQ
QAVLDGEVVVNGGSGASEFSLLQQDLSEGRTDRLVFFAFDLLHLDGFDLTPSKLVDRKQT
LEGILSGSSDIVRYSEHFDDEGGLVLKHACRLSLEGIISKIGDAPYRGGRGKDWVKSKCS
ARQEFVVAGYVPSSVSSSAIGSLVMGYYQDGKLMHAGRVGTGYSNKVAQTLFRQMQELKV
TKSPFEEKLTAVERKDVVFLRPELVAEVEFRGWTADAHIRHASFRGMREDKQARDVVQEA
GPAMASSDDQKELGSRTVTLTHPDRIYWPDAGVTKAGLADYYVEVWRHMAPFVVNRPLAL
VRGPDGIGKPLFFQKHAWKGMNKHIGTAKDPADPSEEDIIIRDLDGLLGLVQGGTLEIHP
WGSTIDQWEKPDMVNIDLDPGDGTTWEDVIAAAYEVRERFEAMGLSGFVKTSGGKGLHVV
APVKPKAEWPDVKAAMKALADSMAGDSPDRYVSTITKSKRKGKILIDYLRNGRGATAVAP
YSTRARPGAPVSMPIAWEELEQAIGPAYFTVNNATSRHEQLDRDPWSDFREAEAEIKTSR
TKRQKR
NT seq 2541 nt NT seq  +upstreamnt  +downstreamnt
atggcactcgaggcctataacgagaaacgcgatttcaaggcgtcgcccgagccgaagggg
agaaaagtcaagtccgggggaaacagcttcgtcatccagaagcatgcagcgcgccggctt
cactacgacttccggctggaaatggatggcgtgctgaagagctgggcggtcacgcgtggc
cccagccttgtgccaggtgagaagaggctcgccgtccatgtcgaagatcacccgctcgac
tacggcgatttcgaaggaacgatcccgcaaggaaactacggagcaggctcggtcctcctc
tgggatcgcggcacctggcatccgatcggagatcagaaacgcggctacagcaagggacac
atggagttcgagctcaagggggagaagctcgagggccgatggcatctcgtgcgcatggcc
aaccgccgtggtgaaaagcgggagaactggctcctcatcaagggggaagatgaattcgcg
cgggccgaaggcgatgccgacatcctggaggagcttcccaagtccgtgaagaccggacgg
cttctcgaggaactgcaaggcggcacgaaggcgaaggccaagcgaaaaacgccgccgaag
acatccgacccttctccttcggacgaggcgctgaatggacccgtcaagaataacagctta
ccgaagctgaagggagcgaagaaggcagagctgcctgacttcgtgacacctcagcttgcg
acgctcgtgaagagtgcgccttccgggaagcgatggatccacgaaatcaagctggatgga
taccgtgtccaggcacgtatcgacggcggcgacgtcaagctcctgacccggaccggcctc
gactggacccacaaattcggcgatgcgatcgtggatgcactcaagcgcctgccggtgcag
caggccgtgctggacggcgaagtggtggtcaacggcggatcgggcgcaagcgaattctcg
cttctccagcaggatctgagcgaggggcgaacggatcggctggtcttcttcgccttcgat
ctcctccatctcgatgggttcgatctgactccctccaagcttgtggatcgcaagcagacg
ctggaaggcatcctgtccggcagcagcgacatcgttcgttacagcgagcatttcgatgac
gaaggagggcttgtgctgaagcacgcctgccgcctcagcctcgaggggatcatctccaag
atcggagatgccccctaccgcggcgggcggggaaaagactgggtgaagtcgaaatgctcg
gcgcggcaggagttcgttgtcgccggctatgtcccctcctccgtctccagcagcgccatt
ggctcgctggtgatgggctattaccaggacggcaagctgatgcatgctggccgggtgggc
accggttacagcaacaaggtcgcccagacgctcttccgccagatgcaggagctgaaggtc
acgaagagcccgttcgaggagaaactgacggcggtcgagcggaaggatgtcgtcttcctc
agacccgaactggtggcggaagtcgagttccgtggctggactgctgatgctcacatcaga
cacgcctcctttcgtggtatgagggaggacaagcaggcaagggatgtggtgcaagaggcc
ggtccagccatggcaagcagcgatgaccaaaaggaactggggagccggacggtaacgctc
acccacccggaccgcatctactggccggatgccggcgtgaccaaggctggccttgccgat
tactacgtcgaggtttggcggcacatggctccgtttgtggtcaaccgcccccttgcattg
gtgcgaggtcccgatggcatcggcaaacctcttttcttccagaagcatgcctggaagggc
atgaacaagcatatcggcacggcgaaggatcccgccgatccttccgaagaggatatcatc
atccgggacctcgacggcttgctcggtctcgttcagggcgggacgctcgaaatccatccc
tggggctcgaccatcgaccagtgggaaaagccggacatggtcaatatcgacctcgacccc
ggcgacggaacgacctgggaggacgtcatcgcagccgcctatgaggttcgcgaacgcttc
gaggcgatggggctttccggattcgtcaagacgtccggtggcaaggggctgcacgtcgtc
gcaccggtgaaacccaaggcggagtggccggacgtcaaggcggcgatgaaggcgctcgcc
gacagcatggccggcgatagccccgaccgctatgtctccaccatcaccaagtcaaagcgg
aagggaaagatcctgatcgactacctgcgcaatgggcgaggcgccacggctgtggccccc
tattcgacgcgggctcgccctggagccccggtatccatgcccatcgcctgggaggagctg
gagcaggcaatcgggccggcgtacttcacggtgaacaacgcaacgagccgccacgagcag
ttggacagggatccgtggtcggatttcagggaagcagaggcggagatcaagacgtctcgg
acaaagcgccagaagcgctag

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