KEGG   Rhodococcus sp. WMMA185: BFN03_13610Help
Entry
BFN03_13610       CDS       T04814                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rhw  Rhodococcus sp. WMMA185
Pathway
rhw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rhw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BFN03_13610
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhw03400]
    BFN03_13610
Enzymes [BR:rhw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BFN03_13610
DNA repair and recombination proteins [BR:rhw03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BFN03_13610
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AOW93338
UniProt: A0A1D8T6P7
LinkDB All DBs
Position
complement(3031128..3033431)
Genome map
AA seq 767 aa AA seqDB search
MYWRREVCMTAGTRQITIGGHRLSLTNLGKVLYPDSGTTKGEVVDYYTRIAPAMLPHIAD
RAATRKRWPNGVDSESFFEKNLASSVPAWLERRSLEHSDRTVQYPLLNSVAALAWAGQQA
ALELHVPQWRFEGQRRGSATRIVFDLDPGPGAGLPECAEVARAVRDLVANLGWTTFPVTS
GSKGIHLYVPLDRKLEGAGPSTVAKQVATGLEALRPELVTASMAKAVRAGKVFVDWSQNN
PSKTTIAPYSLRGRSQPWVAAPRTWDELDDPDLRQLRFEEVLERWESDGDLLAGLDPPWE
GAATLAEYRRKRDPGRTPEPMPSVVRPGDNSRFVIQEHHARRLHYDLRLERDGVLVSWAV
PKNVPTTPSENRLAVRTEDHPLEYLTFAGTIPKGEYGGGVMTIWDSGTYDAEKWRDDEVI
VRLRGEKARGRFALIHTKGDQWLMHLMKNQEASGPGSSDLPRGLSPMLATPGTLDGLESD
AWAFEGKWDGVRVIAEVSGGRLRLMSRTGNDKTGDYPRLGWLAEALGDHEVVLDGEVVAF
DDRGVSDFGLLQQGGEPHFLAFDVLYLDGVSLLRKKYTDRRRVLEALAAKVDDLVVPPQL
HGPAQEALDFSRGKGWEGVVAKRRDSVYLPGKRGSSWIKVKNWRTQEVVIGGWRRGRGAR
SEGIGSLLLGIPDSGGLRYVGRVGTGFTQRDLRELASMLHPLETATSPFIDTLPTADRRD
AVWVTPTLVGEVRFMEWTESGRLRHPSWRGLRDDKAPEDVKVEVDRV
NT seq 2304 nt NT seq  +upstreamnt  +downstreamnt
atgtattggcggcgggaggtgtgcatgacggcggggacccgacagatcacgatcggcgga
catcgactgtcgctgaccaacctcggcaaggttctctacccggactcgggaacgacgaag
ggtgaggtggtcgactattacacccggatcgcacccgccatgctcccccatatcgccgac
cgtgccgccacgcgcaagcggtggcccaacggggtggacagcgagtcgttcttcgagaag
aacctggcgtcctcggtgcccgcgtggctcgagcggcggtccctcgagcactccgatcgc
actgtgcagtaccccctgctgaattcggtcgctgcccttgcctgggcagggcagcaggcc
gccctcgaactgcacgtgccgcaatggcgcttcgaggggcagcgacgtgggtcggccacc
cgtatcgtgttcgacctggatcccggtccgggagcggggctgcccgagtgcgcggaggtg
gctcgggcggtgcgggatctcgtcgcgaaccttggctggaccacatttccagttaccagc
ggtagcaagggtattcatctatacgtaccgctcgaccgcaagctcgaaggtgcgggtccg
tcgactgtagcgaagcaggtggcgacgggcctcgaggcactgcgtcccgaactcgtcacc
gcaagcatggcgaaggcggtgcgcgccggcaaggtattcgtcgactggagccagaacaac
ccgtcgaagaccacgatcgcgccctattcactgcggggccgctcccagccgtgggtcgcg
gcgccgaggacctgggatgaactcgacgaccccgatctacggcagttgcggttcgaggag
gtcctcgaacgatgggagtcggacggcgacctgcttgccggtctcgacccgccgtgggag
ggtgcggccaccctcgccgagtatcgacgcaagcgcgaccctgggcgcacacccgagccg
atgccgtccgtggtgaggcccggagataacagcagattcgtcatccaggaacaccacgct
cggcgtcttcattacgatctccgcctcgaacgcgacggtgtcctcgtgtcctgggcggtg
cccaagaacgtgccgactacgccgtcggagaaccgactggccgtgcgcaccgaagaccat
ccgctcgagtacctcacgttcgcgggaaccatcccgaagggtgagtacggcggcggcgtg
atgaccatctgggactcggggacgtacgacgcagagaaatggcgggacgacgaggtgatc
gtccggttgcgcggtgaaaaggcaaggggccgtttcgcgctgatccacaccaagggtgac
cagtggctgatgcacttgatgaagaaccaggaagcctccggacccggatcgtcggacctg
ccgcgtgggctctcacccatgctcgccactcccgggaccctcgacggactggaatccgac
gcgtgggcgttcgaaggaaaatgggatggggtcagagtgatcgccgaggtcagtggtggt
cgtctgcggttgatgagccggacgggcaacgacaaaaccggtgactacccgcgattgggt
tggctggcagaggctctcggtgatcacgaggtggtcctcgatggcgaggtggtcgcgttc
gacgatcgaggggtatccgacttcggtctgttgcagcagggaggcgagccgcactttctg
gcattcgacgtgctgtacctcgacggggtgtcgttgctgcgtaagaagtacaccgaccgg
cgccgggtcctcgaagcgttggcggccaaggtggatgacctggtggttcccccgcaactg
cacggtcctgcgcaggaggcgctggatttcagtcgaggcaaggggtgggaaggcgtcgtc
gccaagcgccgcgactcggtgtatctgccgggcaagcgcgggtcgagttggatcaaggtg
aagaactggcgcacacaggaagtcgtgatcggagggtggcgccggggtcggggcgcgcgg
tcggaggggatcgggtcgttgttgctcggcatccccgacagcggtggacttcgctacgtc
ggtcgggtgggaaccggattcacccagcgcgacctacgggaactcgcgtcgatgctgcac
ccgctcgaaactgcgaccagtccgttcatcgacaccctgcccaccgccgaccgcagggat
gcggtgtgggtgacgcccacactggtaggggaggtgcggttcatggaatggaccgaatcc
gggcggctacgacacccgagttggcgcggcctcagggacgacaaggcgcccgaggacgtg
aaggtagaggtggatcgagtctga

DBGET integrated database retrieval system