KEGG   Rhizobium sp. N731: AMK02_CH00654Help
Entry
AMK02_CH00654     CDS       T04809                                 

Definition
(GenBank) ATP-dependent DNA ligase protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rhx  Rhizobium sp. N731
Pathway
rhx03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rhx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AMK02_CH00654
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rhx03400]
    AMK02_CH00654
Enzymes [BR:rhx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AMK02_CH00654
DNA repair and recombination proteins [BR:rhx03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AMK02_CH00654
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S NdhM
Motif
Other DBs
NCBI-ProteinID: ANK84294
LinkDB All DBs
Position
complement(652922..654901)
Genome map
AA seq 659 aa AA seqDB search
MTLETYQAKRNFKLAPKSKDGKAVSAKRPATEARSPAPRERDWPKGARKGAMPDFIEPAL
AKLKPKPPAGDRWIHEIKFDGYRLQVRVENGKVRMLTRSGLDWTEKFGSEVVEAFAALPV
QSAVIDGEIVVERDTGASDFSALQRDLSEGRDDRFVFYAFDLLHVDGHSLVNVALIDRKQ
LLESLLPDDNDKLRYSAHFNESGSLVLDHACRLSLEGVISKLRDSKYTSGRKGDWIKSKC
SHRQEFVIGGYVPSTSMKNAIGSLAMGYYQGGELKHVGRVGTGYTAATAQLLYEKLSRLT
QNENSFDDKLTSEERRGLIYVKPQLVGEVEFRAWSADANLRHAAFRGLREDKPAKDVTRE
TEKTMAPPLPKSAVALTHPDRIYWPDEGVTKEGLANYYAEVWRFMAPYVVNRPLALLRLP
DGINGRQRFFQKHAWKGMNPHIGEITDPKDKHGEKLLRITDFDGIVALVQSAVLEIHPWG
ATTDNWEKPDMITMDLDPGDEVEWEDVIAAAYELKERLEAEGLAAFVKTSGGKGLHVVTP
LTPKAGWVEVKGFAKWLADSMSADDPDRYLATATKAKRTGRIFIDYLRNGRGNTAVAPYS
ARARPGAAVSMPLEWSELTADVGPTYFTVDNTPTRLDALPRDPWDGFFAAAKPLEKKKR
NT seq 1980 nt NT seq  +upstreamnt  +downstreamnt
atgaccctcgaaacctatcaggcgaagcgcaatttcaaactcgctcccaaatcgaaagac
ggcaaggcggtttccgccaaaagaccggcgacagaggccagatccccggcaccacgagaa
cgcgactggccgaagggtgcgcgcaagggcgcaatgcccgattttatcgaaccggcgctt
gccaagctgaagccgaagccgccggctggtgaccgctggatccacgaaatcaagttcgat
ggctaccggctgcaggtcagagtcgagaacggcaaggtcagaatgttgacccgcagcggt
ctcgactggacggagaaattcggcagcgaggtggtcgaggcctttgccgccctgccggtg
caatcggcggtgatcgacggcgaaatcgtcgtcgagcgcgataccggcgcctcggatttc
tcagcgctccaacgcgatctgagcgagggccgcgacgatcgcttcgtcttctatgccttc
gatcttctccacgtcgacggccacagcctggtcaatgtggcgctgatcgatcgcaagcag
ctgctcgaaagcctgctgcccgacgataacgacaagctgcgctacagcgcgcatttcaac
gaaagcggcagcctggtgctcgaccatgcctgccggctcagcctcgaaggggtgatttcc
aaactgcgcgacagcaaatacacgtcgggacgcaaaggcgattggatcaaatcgaaatgc
tcgcaccggcaggaattcgtcatcggcggctacgtgccgtcgacatcgatgaagaatgcg
atcggctcactggcgatgggctattaccaaggcggcgaactcaagcatgtcgggcgcgtc
ggcaccggatatacggcagcaaccgctcaactgctttacgagaaattgtcgcgtctgacg
cagaacgaaaactcgttcgacgacaagctgacgtcagaggagcggcgcgggctgatctat
gtcaagccgcagctggtcggcgaagtcgagttccgcgcctggtcggctgacgccaatctg
cgccatgcagccttccgcggcctgcgagaagacaagcctgcgaaagacgtgacgcgcgag
acggaaaagaccatggcccctcccctgccgaaatcagcggtggcgctgacccacccggac
cgcatctactggccggacgagggcgttaccaaggaggggctggccaattattacgccgag
gtctggcgcttcatggcgccttatgtcgtcaatcggccgctggcgctcctgcgcctgccg
gacgggatcaacggccggcagcggtttttccagaaacatgcctggaagggcatgaatccg
catatcggggagatcaccgatcccaaggacaagcatggggaaaagctgctcagaattacc
gatttcgacggtatcgtggcgctggtgcaatcggccgtgcttgaaatccatccctggggc
gcaacgaccgacaattgggaaaagcccgatatgatcaccatggacctcgatcccggcgac
gaggtggagtgggaggatgtgatcgccgccgcttacgaattgaaggagcggctggaggcc
gaaggcctcgccgccttcgtcaagacctcaggcggcaaggggctgcatgtggtgaccccg
ctcacgccgaaggccggctgggtcgaggtgaagggtttcgccaaatggcttgccgacagc
atgtccgccgacgatcccgaccgctatctggcgacggcgacgaaggccaagcgcacgggg
aggattttcatcgactatctccgcaacggccgcggcaatacggcggtcgcgccctattcg
gcacgggcacggccaggcgccgcggtctcgatgccgctggaatggagcgagctcaccgcc
gacgtcggaccgacctatttcacagtggacaatacgccgacccggctcgacgcgctgccg
cgcgatccctgggacggatttttcgctgcagcgaaaccgttggaaaagaagaagcggtag

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