KEGG   Rhodoferax koreense: RD110_14605Help
Entry
RD110_14605       CDS       T04721                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rhy  Rhodoferax koreense
Pathway
rhy03030  DNA replication
rhy03410  Base excision repair
rhy03420  Nucleotide excision repair
rhy03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rhy00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    RD110_14605
   03410 Base excision repair
    RD110_14605
   03420 Nucleotide excision repair
    RD110_14605
   03430 Mismatch repair
    RD110_14605
Enzymes [BR:rhy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RD110_14605
    6.5.1.6  DNA ligase (ATP or NAD+)
     RD110_14605
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     RD110_14605
DNA replication proteins [BR:rhy03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    RD110_14605
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     RD110_14605
DNA repair and recombination proteins [BR:rhy03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     RD110_14605
   NER (nucleotide excision repair)
    Other NER factors
     RD110_14605
   MMR (mismatch exicision repair)
    Other MMR factors
     RD110_14605
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M RNA_ligase ParA
Motif
Other DBs
NCBI-ProteinID: APW40710
UniProt: A0A1P8K3X5
LinkDB All DBs
Position
3146368..3147186
Genome map
AA seq 272 aa AA seqDB search
MALAALVPARAGAEAPALLLANVYRQGMPLADYWVSEKYDGVRGYWDGRQLRTRGGEHVA
APGWFTADWPAVPMDGELWAGHGAFAQAVSTVRQQIPADATWRRMAFMVFDLPAHGGTFD
ERLTALDKLVMRMNRPWVRAVAQTRVASHAALMALMRKTVGAGGEGLVLHRGASLYRGTR
SDDLVKLKPFDDAEARVVAHLPGKGRYEGAMGALLVETPQGQRFRLGTGFSAAQRRDPPA
IGSWITYRFRDVNPSGVPRFASFLRTREDLPP
NT seq 819 nt NT seq  +upstreamnt  +downstreamnt
atggcgcttgccgccctggtgccggcgcgggccggtgccgaagccccggctctgctgctc
gccaacgtctaccggcagggcatgccgctggccgactactgggtcagcgagaaatacgat
ggcgtgcgcggctactgggacggccggcaactgcgcacgcgcggcggtgaacacgtcgcc
gcgcccggctggttcacggcggattggcccgcggtgccgatggatggcgaactctgggcc
ggccatggcgcgttcgctcaggccgtgtccaccgtgcgccagcagatcccggcagatgcg
acctggcgccgtatggctttcatggtgttcgacctgccggcgcatggcggcactttcgac
gaacgcctgaccgccctcgacaagctcgtgatgcgaatgaaccggccctgggtgcgcgcg
gtggcgcagaccagggtcgccagccatgccgcgctgatggctttgatgcgcaagacggtc
ggtgccggcggcgagggcctggtgctgcaccgaggtgcctcgctctaccggggaacgcgc
agcgacgacctggtcaagctcaagcccttcgacgacgccgaggcccgtgtcgtcgcccac
ctaccgggcaagggccggtacgaaggtgccatgggcgcgctgctggtggaaaccccgcag
gggcagcgcttcaggctcggcaccggtttcagcgcggcgcagcggcgcgatccacccgcc
atcggcagctggatcacctaccgcttcagggacgtcaaccccagcggcgtgccgcgtttc
gcgagcttcctgcgaacgcgcgaggacctgccaccctga

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