Rathayibacter iranicus: C7V51_01685
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Entry
C7V51_01685 CDS
T05878
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ria
Rathayibacter iranicus
Pathway
ria03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ria00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C7V51_01685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ria03019
]
C7V51_01685
Messenger RNA biogenesis [BR:
ria03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C7V51_01685
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
AZZ54738
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Position
363501..365177
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AA seq
558 aa
AA seq
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MPSPVITPAPLQPGTLRIIPLGGLGEIGRNMTIFEIDGKILVIDCGVLFPEENQPGVDLI
LPDFSPIKDRLDDIVGVVLTHGHEDHIGAVPYLLRLKRDIPLIGSTLTLALVEAKLKEHR
IKPYTLAVKEGDVENLGPFELEFVAVNHSIPDALAVAIVTDAGSILHTGDFKMDQLPLDG
RITDLRAFARLDEEGIDLLLVDSTNADVPGFTPNERDIGPVIESVMAKATRRVIVASFSS
HVHRVQQVLDAAHATGRRVALLGRSMVRNMGIAADLGYLRVPQGVLIDMKKAGDIPEDEI
VYMSTGSQGEPMAVLSRMANLDHHIEPGEGDTVILASSLIPGNENAVYRVINGLTKLGAT
VVHKGTAKVHVSGHAAAGELIYCYNILKPLNVMPVHGEYRHLVANAKLARETGIAEENTI
IAEDGTVIDLLDGTATVVGQLDLGFVYVDGSSVGEITDADLKDRRILGEEGFISIIVVVE
AGTGRVVVGPEIHAKGFAEDDRVFDEVKPRIAKALEEAVQNGASDQHALSQAVRRVVGRW
VNISYRRRPMIVPLVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccagtcccgtgatcacccccgcccctctccaaccgggcacactgcggatcatccct
cttggcggtctcggcgagatcggccgcaacatgacgatcttcgagatcgacggcaagatc
ctggtgatcgactgcggcgtgctcttcccggaggagaaccagccgggcgtcgacctgatc
ctgccggactttagcccgatcaaggaccgtctcgacgacatcgtcggagtggtgctgacg
cacggtcacgaagaccacatcggagccgtcccttacctcctgcgcctcaagcgcgacatc
ccgctgatcggctcgaccctcacgctcgccctcgtcgaggcgaagctcaaggagcaccgc
atcaagccctacacgctggccgtgaaggagggcgacgtcgagaatcttggcccgttcgaa
ctcgagttcgttgccgtcaaccattcgatcccggacgcgctggccgtcgccatcgtcacc
gacgccggctcgatattgcacaccggcgacttcaagatggaccagttgccgctggacggc
cggatcaccgacctccgcgcgttcgctcgtctcgacgaggagggaatcgaccttctcctg
gtcgattcgaccaacgcggacgtccccggattcacaccaaacgagcgtgatatcggaccg
gtcatcgagagcgtgatggccaaggcgacgcgtcgggtcattgtcgcgagcttttctagt
cacgtgcaccgggtgcagcaggtgctcgacgcggcacacgccaccgggcgccgggtggcg
ctcctgggtcgctcgatggtccgcaacatggggatcgcggccgaccttggctacctcagg
gtgccgcagggggtgctaattgacatgaagaaggcgggcgatatccccgaggacgagatc
gtctatatgtccaccgggtcgcagggcgagccgatggcggtgctgagccggatggctaat
ctcgatcaccacatcgagccgggggagggtgacacggtgatccttgcctcgagtctcatt
ccgggcaacgagaacgctgtctaccgggtgatcaacggactcaccaagctgggcgcgacc
gtggtgcacaagggcactgcgaaagtgcacgtctcgggtcacgccgccgccggtgagttg
atctactgctacaacatcctcaagccgctgaacgtcatgcccgtgcacggggagtatcgg
cacctcgtcgccaacgcgaagctggcgcgtgagacgggcatcgcggaggagaacacgatc
attgccgaggacggcaccgtcatcgacctgctcgacgggacggccaccgtggtcggacag
ctcgatctgggcttcgtctacgtcgacggctcctccgtgggcgagatcaccgacgccgac
ctcaaggacaggcggattctcggcgaggagggcttcatctccatcattgtggtcgtcgag
gccggaacggggcgggtcgtggtcggcccagagattcatgccaagggctttgcagaggac
gaccgcgtcttcgacgaggtcaagcctcgcatcgcgaaggctcttgaagaggcggtgcag
aacggagcaagcgatcagcacgcgctctcgcaggcggtccggcgcgtcgtcggccgctgg
gtgaatatcagttaccgccgtcgtccgatgatcgtgccgctggtcatcgaggcctaa
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