Roseburia intestinalis M50/1: ROI_28680
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Entry
ROI_28680 CDS
T02598
Name
(GenBank) Transcriptional regulator
KO
K21453
TetR/AcrR family transcriptional regulator, biofilm operon repressor
Organism
rim
Roseburia intestinalis M50/1
Brite
KEGG Orthology (KO) [BR:
rim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rim03000
]
ROI_28680
Transcription factors [BR:
rim03000
]
Prokaryotic type
Helix-turn-helix
TetR/AcrR family
ROI_28680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TetR_N
HTH_Tnp_1_2
UPF0122
HAD_2
HTH_10
NUMOD1
PCI
ATG17_like
HTH_40
Put_DNA-bind_N
HTH_24
Motif
Other DBs
NCBI-ProteinID:
CBL09773
UniProt:
D4KSC1
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All DBs
Position
complement(2875492..2876088)
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AA seq
198 aa
AA seq
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METKETILKKALDMFAKSGYDSVSIRDIAKAVNIKESSIYYHFKNKQDILDSLVEKFESH
MKELTDMLQASMSDSHNVNAFSWDWLREFYFEQYLFDTFCNQMMRFMMIEQFHNENMRMS
YERYLFELPHRIQTQSFMMLSKLGILNEQQATKVGNDFFASITMLTFKYLLNGELTKAKK
EAFSEEAFTYINRMFRED
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaaaagagactattttaaaaaaagcgttggatatgtttgcaaaatcaggttat
gattccgtatcaataagagatattgcaaaagctgtgaatataaaagaaagttctatttac
tatcatttcaaaaataaacaagatattttagactcacttgtagaaaagtttgagagccat
atgaaagaacttacagatatgttgcaggcatcaatgtctgattcacataatgttaacgca
ttctcatgggattggctgcgggagttttattttgaacaatatttatttgatacattttgt
aatcaaatgatgcgttttatgatgattgaacaatttcataacgaaaatatgagaatgtcg
tatgagcgttatctatttgaattacctcatagaattcaaacacaatcatttatgatgctt
agcaagcttggaattttgaatgaacaacaggcaacaaaagtagggaatgatttttttgca
agtattacaatgcttacatttaaatatttattaaatggggaattgacaaaagcaaagaaa
gaagcttttagcgaagaagctttcacgtatatcaatagaatgtttcgggaggattga
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