Roseburia intestinalis XB6B4: RO1_04570
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Entry
RO1_04570 CDS
T02597
Name
(GenBank) ATP-dependent nuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
rix
Roseburia intestinalis XB6B4
Brite
KEGG Orthology (KO) [BR:
rix00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rix03400
]
RO1_04570
Enzymes [BR:
rix01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RO1_04570
DNA repair and recombination proteins [BR:
rix03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
RO1_04570
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
ATPase_2
nSTAND1
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
CBL11220
UniProt:
D4KV30
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All DBs
Position
442683..446222
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AA seq
1179 aa
AA seq
DB search
MSLQFIFGNSGSGKSDFLYDSVLKQAKENKEQQFLIIVPEQFTMQTQRELVERQKQHAIM
NVDVLSFARLAYRVFDDLGKQNVVVLEETGKNLVLRKVAEQKKAELKVLGANMNKMGYVG
EVKSLISELMQYNVSPDALAEFLEKEPLGEGLRLKMQDVLTMYQGFTEYLKGRYITAEEV
LELLYDVAEESELLRNSVIVLDEFTGFTPIQNRLMEKLLVLAKKVSVSVTMDVREDFYQC
RGVHELFAMSKKTVASLLKVAELCKVPVEEPLVLPTGKQRRYVNAADLYFMEQNLFRPGA
GSYRYKASEQSMQHIRITSLKNPREELKFAAREIVRLTRENGYRYRDIAVVTGDVQQYGN
YVPEIFEQYHIPYFIDQTKNILFHPFIECIRAILEMIEYDFSYESVFRFLRCGLAARVVT
EAKNSDKEPDPAATEDLTQQPETGSHGLTEQEIDRLENYVLARGIRGASRWSRPWTFVMP
DGTLEDMARLNEIREAVYENFKPLLEAFRGKDNTVSTQTYELYSLIRRLNMEQLLKERGN
FFEAHGNQARAKEYDQIYKIVMDLLDKVTSLLGDETMTIREYSDILDAGFEAAKVGIIPP
GNDTVTVGDIERTRLNHVKILFFVGVNDGVVPKAGNQGGIISQFEREKMAEYHLELAPGA
REKVFIQKFYLYLNMTKPSERLYVTFCRVNSDGKALRRSYLIGTLLKLFPQLAVEEPSEE
ETLEGALTAESALPFLMEGLTKPVEDEEAWTALLAWYLSDEGEREKVMQLFDAAFGAHKD
DAISKAVTKALYGNTLENSVTRLEQFAACAFAHYLSYGLRLKERELQQFASVDMGNIYHD
VLERFAKGIELSDYTWFDIPEKAQEALLSQSMEDAIAGSGIGDVFEDARNSYLLKRMEAT
AKRTIWALMLQVRKGKFVPSGFEVSFSRAERLDAVQFQLGEDEKMRLRGRIDRVDTYETD
DKVYVKIIDYKSGNTTFSLLNFYYGLQLQLVVYMNAALELTKKKYKGKDTEPAGIFYYHI
TDPMVDADGQESEEEIRRSILEQLKVGGLVNEDPEIYGAMDTDFSGTSTVIPVALKADGS
LKATSKTASTYEFGLMSDYVRKKIEHVGKEIFAGNVAVKPYLLGDRSGCDYCPYHTICGF
DVRMPGFSYQQFEKFDSSEEILAHIREEIGEPGKNPDGE
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgtccctacaatttatatttggcaattcgggcagcggaaaatcggattttctgtatgat
tccgtgctgaaacaggcgaaagaaaataaagagcagcagtttttaatcattgtgccggag
cagtttaccatgcagacacagcgggaactggtcgagaggcaaaaacagcatgcaatcatg
aacgtggatgtgctcagttttgcaagactcgcataccgcgtctttgatgatcttggaaaa
caaaatgtggttgtgctggaggagaccggaaaaaatcttgtactgcgcaaggtggcagaa
cagaaaaaagcagaactgaaagtgcttggtgcgaatatgaataagatgggatatgtcggc
gaggtaaaatccctgatctcagagctgatgcagtataatgtcagtccggatgcgctggca
gagtttttggagaaagaaccgcttggggagggactgcgcttaaaaatgcaggatgtcctc
acgatgtatcagggatttacggagtatttaaagggcagatatatcacggcagaggaagtg
ttagagcttctttatgatgtggcagaagagtccgaactgcttcgtaatagtgtgatcgtg
ttggacgagtttaccggatttacaccgatccagaaccgtctgatggaaaaactgctcgtg
ctggcaaagaaggtcagcgtgtctgtcacgatggatgtcagggaagatttttaccagtgc
aggggtgtacatgaactttttgccatgagtaaaaaaacggtggcgtcgctactgaaggtg
gcagaactgtgcaaagttccggtggaggagccgttggtactgccgaccggaaaacagagg
cgctatgtcaatgctgccgacctttattttatggagcagaatctctttcgtccgggagcg
ggaagctacagatacaaagcatcggaacaatctatgcagcatatccgcatcacgtccctg
aaaaatccgagggaagaattaaaatttgctgcccgcgagatcgtgcgcctgacgagggag
aatggttaccgttaccgggatatcgcagtcgtgacaggggatgtgcagcagtatggcaat
tatgtgccggagatctttgagcagtaccatatcccgtactttattgatcagacgaaaaat
attttgttccacccgtttatcgagtgtatccgggcgatcttagagatgatcgaatatgat
ttttcttatgaaagtgtgttccggtttttgcggtgcgggcttgcagcgagagtcgtgacc
gaggcaaaaaattccgacaaggagccagatccggctgcaacggaagatttgacgcagcag
ccggaaacaggatcccatggacttacagaacaggagatcgaccgcctggaaaattatgtc
ctcgcacggggcatccgcggtgcatcccgctggagcagaccgtggacgtttgtaatgccg
gatgggacattggaggatatggcacggttaaatgagatccgtgaggcggtttatgagaat
tttaagccgctgcttgaggcattccgtggaaaagacaatacggtcagcacacagacctat
gagttatacagtctgatcagacggcttaacatggagcagttattaaaggagcgtggaaac
tttttcgaggcgcatggcaatcaggcgcgggcaaaggaatatgaccagatctataaaatc
gtgatggatctgctcgacaaagtgacgtctctgctgggcgatgagacgatgacgatccgg
gaatacagtgatatcttagatgccggatttgaggcggcaaaagtcggtattatcccgccg
ggtaacgacacggtgacagtcggggatatcgagagaacccgtctgaaccatgtaaaaatc
ttattttttgtcggtgtcaacgacggagttgtgccgaaagcagggaatcagggtggcatt
atttcccagtttgagcgtgaaaagatggcagaatatcacctggaactggcgccgggcgca
agggaaaaagtatttatccagaagttttacctgtatttaaatatgacaaaaccgtccgag
cggctgtatgtgacattctgccgcgtcaactccgatggaaaagcactgcggcgttcgtat
ctgatcgggacactcttaaaactgttcccacagcttgcggtggaagaaccgtccgaggag
gagacattagaaggtgcactgactgcggaaagtgccctgccgtttctgatggaagggctg
acaaaaccggtggaggatgaagaggcatggactgcacttttggcatggtacctgtcggat
gagggtgaacgggaaaaagtaatgcagctttttgatgcggcgtttggcgcccataaagat
gatgcgatcagcaaggcagtcacgaaagctttatatgggaataccttagaaaacagcgtg
acaaggctcgaacagtttgctgcctgtgcgtttgctcattatttaagttatggactgcgg
cttaaagaacgggaactgcagcagtttgcgagtgtggatatgggaaatatttatcatgat
gtgttagagcgttttgcaaagggcatagagctgtcggattatacctggtttgatatcccg
gagaaagcgcaggaagccctgctttcccagagcatggaagatgcgatcgcaggcagcggg
atcggggacgtattcgaggacgcaagaaacagttacctgttaaagcggatggaggcaacg
gcaaaacggacgatctgggcactgatgttacaggtgcggaaaggaaagtttgtgccgagc
ggttttgaggtgtcattttcgcgcgccgagcggctggatgcggtgcagtttcaactgggt
gaagatgaaaaaatgcgtctgcgcggcaggatcgaccgcgttgatacttacgagacagac
gataaggtctatgtaaaaatcattgattataaatcgggcaacaccactttttcactttta
aatttttattatggactgcagctccagcttgtcgtctacatgaatgcggcactggaactc
acaaagaaaaaatataagggaaaagatacggaacctgcaggtattttttattatcacatc
acagatccgatggtggatgcggatggtcaggagtccgaggaggagatcagacggagtatt
ctagaacagcttaaagtgggaggtctggtcaatgaagatccggaaatctatggtgcgatg
gatactgatttttcaggcacatcgacagtgatcccggtagccttaaaagcggacggctcc
ttaaaggcgacatctaagacggcgagcacctatgagtttggactgatgtccgattatgtg
cgaaagaagattgagcatgtgggaaaagagatctttgccggaaatgtggcggtaaaacct
tacctgttaggagacaggagcggctgcgattactgtccatatcacacgatctgcggattt
gatgtacgcatgccgggattttcctatcagcagtttgaaaaatttgacagcagtgaggag
atccttgcacatatccgggaagagattggagagccgggaaaaaatccggacggtgaataa
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