KEGG   Rhizobium leguminosarum bv. viciae 3841: pRL120229Help
Entry
pRL120229         CDS       T00402                                 

Definition
(GenBank) putative DNA ligase family protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rle  Rhizobium leguminosarum bv. viciae 3841
Pathway
rle03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rle00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    pRL120229
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rle03400]
    pRL120229
Enzymes [BR:rle01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     pRL120229
DNA repair and recombination proteins [BR:rle03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     pRL120229
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: CAK11941
GeneDB: pRL120229
RhizoBase: pRL120229
UniProt: Q1M4N0
LinkDB All DBs
Position
pRL12:complement(236550..239195)
Genome map
AA seq 881 aa AA seqDB search
MASDKLSTYRSKRDFKKTEEPSGEKRLARSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKKSPE
QALAKGDFKFTLEGKRLHGSFVLVRMRNDRNGGNRTNWLLIKHHDEFSVENNGEAILEEN
DTSVASGRTMEMIAAGKGRKPKPFMVEGGDVQADAVWDSNDGLAAEERKEGAGGGRKSKP
ATNVDLPDFIAPQLCQTLERPPAGTGWLHEIKFDGYRIQMRVLDGEATLKTRKGLDWTAK
YLEIAEAASTLPDSIIDGEICALDDHGVPDFAALQAALSEGKTGELVYFAFDLLYEGGED
VRSLPLIERKARLQSLLSDAGSDPRIRFVEHFDTGGDAVLRSACKLSLEGIVSKEADAPY
QSGRTESWAKSKCRSGHEVVIGAYAKTNGKFRSLLVGVYHGDHFVYVGRVGTGYGAKKVE
TLLPKLKALETAKSPFTGIGAPKKEAEVTWLKPELVAEIEFAGWTADGIVRQAAFKGLRD
DKPAKEVKADRPAKPAQTDVPQPVVEAKARPIRRKSAKAEVMGVLISNPDKPLWPNANDG
KPVTKEELARYYEAVGSWLIEHIKGRPCSIIRAPDGIGGEQFFQRHAMLGTSNLLELVKV
FGDKKPYLQIDRVEGLAAVAQIGAVELHPWNCGPHQPEVPGRLVFDLDPGPDVPFCAVVS
AAREMRDRLDALGLIGFCKTTGGKGLHVVTPLAINKRKPLSWAEAKSFAHDVCQQMARDN
PDLYLIKMTKSLRNGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPK
RFTIRTVPALLSKSSAWEDYNDGKRPLEQAIKRLGKGFKAA
NT seq 2646 nt NT seq  +upstreamnt  +downstreamnt
atggccagtgacaaactatcgacctatcggtcgaagcgcgactttaaaaaaacggaggag
ccgagcggtgaaaaacgcctggcgcgcagcaatcgccgccgcttcgtcatccagaaacat
gatgccacccggctgcactacgacctgcggctcgagctggatggcgtcttcaaatcctgg
gcggtcaccaaaggcccgtctctcgacccgcacgacaagcggctggcagttgaggtcgag
gatcatccgctcgactatggcgacttcgaaggcaccattccgaaaggtcagtatggcggt
gggacggtcatgctctgggaccggggctattgggaaccggaaggaaagaagagccccgag
caggccctcgccaagggtgacttcaagttcaccttggaaggcaaacgcctgcacggcagc
ttcgtgctggtgcgcatgcgcaatgatcgcaacggcggcaaccggacaaattggctgctc
atcaaacaccatgatgagttctccgtcgaaaacaatggcgaagcgatcctcgaggagaac
gacacctccgtcgcctccggccgaaccatggagatgattgccgccggcaagggacgaaag
cccaagcccttcatggtcgagggtggcgacgttcaggctgatgccgtctgggacagcaat
gacggactggctgccgaagagcgaaaagagggcgccggaggcggtcggaaatcgaaaccg
gccacaaacgtcgatctgccggatttcattgcgccgcaactctgtcagaccctggaacgg
cctccggccggcaccggctggcttcacgagatcaagttcgacggttaccggatccagatg
cgagtgctggatggcgaggcgacgctgaagaccaggaaagggctcgactggacggccaaa
tatcttgagatcgccgaggcagcgtcgacattgcccgattcgatcatcgacggcgagatc
tgcgccctcgacgatcatggcgttcctgatttcgcggccctgcaggcggccctttcggaa
ggcaagaccggcgagctcgtctatttcgccttcgatcttctctatgagggaggcgaggac
gtgcgatctctaccgctcatcgagcgcaaggcgcggcttcaaagccttctgtccgacgcc
ggtagtgatccgcgcatccgtttcgtcgagcatttcgacaccggcggtgatgcagttctc
cggtctgcctgcaaactctcactggaaggcatcgtctcgaaagaggcggatgcaccctat
caatccggccgcaccgaaagctgggcgaagtcgaaatgccgctccggccacgaggtggtg
atcggcgcctatgccaagaccaacgggaaattccgatccctgctggtcggcgtctatcac
ggcgaccacttcgtctatgtcggccgcgtcggcacgggatatggcgcgaagaaagtggaa
acgctgctgccgaagttgaaagcgctcgagacggcgaaatcgccgttcaccggcatcggc
gcgccgaaaaaagaggccgaggtcacctggctgaaacccgagctggtggcggaaatcgaa
ttcgcgggctggacggccgacggcattgtccggcaggcggccttcaagggactgcgggac
gacaagccggccaaagaggtcaaggccgatcggccggcaaagcccgcgcaaactgacgtg
ccgcagccggtggtggaggcgaaggccagacccatccgccgaaaaagcgccaaggccgag
gtcatgggggtactgatatccaacccggacaagccgctatggccgaatgccaatgacgga
aaacccgttaccaaggaggaactggcccgctactacgaagccgtcggctcctggctgatc
gagcacatcaagggacggccgtgttcgatcatccgcgcgcccgacgggatcggcggcgag
cagtttttccagcgccatgcgatgctcggcacctcgaaccttctcgaactggtcaaggtc
ttcggcgataaaaagccctatctgcagatcgaccgggtcgaaggcttggctgccgtcgcg
cagatcggcgccgtcgaactgcatccctggaattgcggaccgcatcagcctgaggtgccg
ggccggctcgtcttcgaccttgatccaggtccggacgtaccattctgcgcggtcgtttcg
gcagcccgcgaaatgcgcgatcgtctcgacgcgctcggcctgatcggcttttgcaagacg
accggcggcaagggtctgcacgtcgtcactccactcgcaatcaacaagcgcaagccgctt
tcgtgggccgaagcgaagagcttcgcacacgacgtctgccagcagatggcgcgcgacaat
cccgatctctacctgatcaagatgacgaagagcctgaggaacggccggatcttcctcgac
tatctgcgtaacgaccggatggcgacggcagtggcgcctttgtcaccccgcgcccggccg
ggtgccaccgtctcgatgccgctgacctggacccaggtcaaatcagatctggaccccaag
cgcttcaccatccgcaccgttccggccttgctgtcaaaatcttccgcctgggaagattac
aatgacggcaagcgtccgctggaacaggcgatcaagcggctcggcaagggcttcaaggcg
gcttga

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