KEGG   Rhizobium leguminosarum bv. trifolii WSM1325: Rleg_5341Help
Entry
Rleg_5341         CDS       T00926                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rlg  Rhizobium leguminosarum bv. trifolii WSM1325
Pathway
rlg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rlg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Rleg_5341
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rlg03400]
    Rleg_5341
Enzymes [BR:rlg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Rleg_5341
DNA repair and recombination proteins [BR:rlg03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Rleg_5341
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: ACS59544
UniProt: C6B636
LinkDB All DBs
Position
pR132501:complement(746891..749536)
Genome map
AA seq 881 aa AA seqDB search
MASDKLSTYRSKRDFKKTDEPSGEKRLSRSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKKSPE
QALAKGDFKFTLEGKRLHGSFVLVRMRNDRNGGNRTNWLLIKHHDEFSVENKGEAVLEEN
DTSVASGRTMEMIAGGKGRKPRPFMIEGGDVQADAVWDSNHGLAAEERKDDTGGGRKSKP
ATKVDLPDFIAPQLCRTLERPPAGTGWLHEIKFDGYRIQMRVLDGEATLKTRKGLDWTAK
YPEIAEAASTLPDAIIDGEICALDDHGAPDFAALQAALSEGKTGELVYFAFDLLYEGGED
VRSLPLVERKARLQSLLSDAGDDPRVRFVEHFDTGGDAVLQSACKLSLEGIVSKEADAPY
QSGRTESWAKSKCRSGHEVVIGAYAQTNGKFRSLLVGVYHGDHFVYVGRVGTGYGAKKVE
TLLPKLKALETAKSPFTGIGAPKKEAEVIWLKPELVAEIEFAGWTADGIVRQAAFKGLRE
DKPAIEVKAERPAKPAQTDVPQPTVEAKTRPVRKKGAKAEVMGVLISNPDKPLWPDANDG
KTVTKEDLACYYEAVGSWLIEHIKGRPCSIIRTPDGIGGEQFFQRHAMPGTSNLLELVKV
FGDKKPYLQIDRIEGLAAVAQIGAVELHPWNCEPRQPEVPGRLVFDLDPGPDVPFSAVVS
AAREMRDRLDALGMISFCKTTGGKGLHVVTPLAINKRKPLSWAEAKGFAHDVCQQMARDN
PELYLIKMTKSLRDGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPK
RFTIRTVPTLLSKSSAWEDYGDGKRPLEQAIKRLGKVSKVA
NT seq 2646 nt NT seq  +upstreamnt  +downstreamnt
atggccagtgacaaactatcgacctatcggtcgaagcgcgactttaaaaaaacggatgag
ccgagcggtgaaaaacgcctctcgcgcagcaatcgccgtcgcttcgtcatccagaaacat
gatgccacccggctgcactacgacctgcggctcgagctggatggcgtcttcaaatcctgg
gcggtcaccaaaggcccgtctctcgacccgcacgacaagcggctggcagttgaggtcgag
gatcatccgctcgactatggcgacttcgaaggcaccattccgaagggccagtatggcggt
gggacggtcatgctctgggaccggggctattgggaaccggaaggaaagaagagccccgag
caggccctcgccaagggtgacttcaagttcaccttggaaggcaaacgcctgcacggcagc
ttcgtgctggtgcgcatgcgcaatgatcgcaacgggggcaaccggacaaattggctgctc
atcaaacaccatgatgagttctccgtcgaaaacaaaggcgaagcggtcctcgaggagaac
gacacctctgtcgcctccggccgaaccatggagatgattgccggcggcaagggacgaaag
cccaggcctttcatgatcgagggtggcgacgttcaggctgatgccgtttgggacagcaat
cacggactggctgccgaagagcgaaaagacgacaccggaggcggtcggaaatcgaaaccg
gccacaaaggtcgatctgccggatttcattgcgccgcagctctgccggacactggaacgc
cctccggcaggcactggctggcttcacgagatcaaattcgacggttaccggatccagatg
cgagtgctggatggcgaggcgacgctgaagaccaggaaagggctcgactggacggcaaaa
tatcccgagatcgccgaggcggcatcgacactgcccgatgcgatcatcgacggcgagatc
tgcgccctcgacgatcatggcgctcctgatttcgcggccctgcaggcggccctttcggaa
ggcaagaccggcgagctcgtctatttcgccttcgatcttctctatgaaggtggcgaggat
gtgcgatcgctgccgctcgtcgagcgcaaggcgcggcttcaaagccttctgtccgacgcc
ggcgatgatccgcgcgtccgtttcgtcgagcatttcgacaccggcggtgatgcagttctc
cagtctgcctgcaagctttcactggaaggcatcgtctcgaaagaggcggatgcaccctat
caatccggccgcaccgaaagctgggcgaagtcgaaatgccgctccggccacgaggtggtg
atcggcgcctatgcccagaccaacgggaaattccgatccctgctggtcggcgtctaccac
ggcgaccacttcgtctatgtcggccgcgtcggcacgggatatggcgcgaagaaagtggaa
acgctgcttccgaagttgaaagcgctcgagacggcgaaatcgccgttcaccggcatcggc
gcgccgaagaaggaggccgaggtcatctggctaaaacccgagctagtggcggaaatcgaa
ttcgcaggctggaccgcagacggcattgtccggcaggcggccttcaagggactgcgggaa
gacaagccggccatagaggtcaaggccgaacggccggcaaagcccgcgcaaactgacgtg
ccacagccgacggtggaggcgaaaaccagacccgtccgcaaaaaaggcgccaaggccgag
gtcatgggggtgctgatctccaacccggacaagccgctgtggccggatgccaatgacggc
aaaaccgttaccaaggaggacctggcctgctactacgaagccgtcggttcgtggctgatc
gagcacatcaagggacgtccgtgttcgatcatccgtacacccgacgggatcggcggcgag
cagttttttcagcgtcatgcgatgcccggcacctcgaatcttctcgaattggtcaaggtt
ttcggcgacaaaaaaccatacctgcagatcgaccgtatcgaaggccttgctgccgtcgcg
cagatcggcgccgtcgagctgcatccctggaattgcgaaccgcgtcagcctgaggtgccc
ggccggctcgtcttcgaccttgatccaggtccggatgtgcccttctccgcggtcgtttcg
gcggcccgcgaaatgcgggaccgtctcgacgcgctgggaatgatcagcttttgcaagacc
actgggggcaagggtctgcacgtcgtcactccgcttgcgatcaacaaacgcaagccgctt
tcgtgggccgaagcgaagggatttgcccacgacgtctgccagcagatggcacgcgacaat
cccgaactctatctgatcaagatgacgaagagcctgagggatggccggatcttcctggac
tatctgcgcaacgatcggatggcgacggcggttgcacctttgtcgccgcgcgcccggccg
ggtgccaccgtctcgatgccgctgacctggacccaggtcaaatctgatcttgacccgaag
cgcttcaccattcgcaccgtcccgacgctgctgtcgaagtcctctgcctgggaggattac
ggcgatggcaagcgtccgctggaacaggcgatcaagcggctcggcaaagtctccaaagtg
gcttga

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