KEGG   Rhizobium leguminosarum bv. trifolii WSM1325: Rleg_5638Help
Entry
Rleg_5638         CDS       T00926                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rlg  Rhizobium leguminosarum bv. trifolii WSM1325
Pathway
rlg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rlg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Rleg_5638
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rlg03400]
    Rleg_5638
Enzymes [BR:rlg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Rleg_5638
DNA repair and recombination proteins [BR:rlg03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Rleg_5638
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID: ACS60446
UniProt: C6B958
LinkDB All DBs
Position
pR132503:complement(222642..225290)
Genome map
AA seq 882 aa AA seqDB search
MSDNLSKYRAKRDFKKTGEPSGEAQVKPSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWELEGNRTPEE
ALARGDFKFKLEGKRLHGGFVLVRMRNDRDGGKRTNWLLIKHHDDFSVEENGAAILEEND
TSVASARTMEAIAAGKGRKPTPFMMQNGDVEADAVWNSNHVFAAEERKAGVKTAKKPSAG
KRANSTMPVFVPPQLCETLARPPSADGWIHEIKFDGYRIQMRVEDGEATLKTRKGLDWTA
KYPAIAASASALPDAIIDGEICALDETGAPDFAALQAALSEGKTDNLVYFAFDLLFVGGE
DLRELPLTERKERLATFLSDAGEDPRLHFVEHFETGGDAVLRSACRLSLEGIVSKQADAP
YQSGRTETWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVHRGNHFVYVGRVGTGYGAKVV
DTLLPKLQAMETSESPFTGIGAPKKSPDIVWLKPELVAEIEFAGWTADGQVRQAAFKGLR
EDKPAAEVEAEKPASPAKTEVPDPETSKPAPARFRKGAKVEVMGVMISSPDKPLWPDAGD
GEPVTKVDLAHYHEAVGSWLIDHIKGRPCSIIRTPDGIGGEQFFQRHAMPGTSNLLELVT
VFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPNQPEVPGRLVFDLDPGPDVDFSTVV
AAAREIRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKSKKLSWDIAKGFAHDVCEQMARD
NPDLYLIKMAKNQREGRIFLDYLRNDRMATAVAPLSPRARPGAAVSMPLTWTQVKSDLDP
KRFTVRTVPALLAKSAAWQDYCDGQRPLEQAIKRLGKLKQAA
NT seq 2649 nt NT seq  +upstreamnt  +downstreamnt
atgagcgacaatctttcgaaataccgcgccaagcgcgatttcaagaagaccggcgagccg
agcggcgaggcccaggtgaagccgtcgaaccgccggcggtttgtgatccagaagcacgac
gctacccggttgcattatgaccttcggctcgaactcgacggcgtctttaaatcctgggct
gtgaccaagggcccgtcgctcgacccgcacgacaagcggctggccgtcgaagtcgaagac
catcccttggactacggggatttcgaaggcacgatcccgaaaggccagtatggcggcggc
accgtgatgttgtgggaccgcggctactgggagctcgagggcaacaggacgccggaagaa
gcgctcgctaggggcgatttcaagttcaagctggagggtaagcgcctccatggcggtttc
gttctggtgcgcatgcgcaacgaccgcgatggcggcaaacggaccaactggctgctgatc
aagcatcatgacgatttctcggtcgaggagaacggcgcggccatcttggaggaaaacgat
acgtccgtggcgtccgcgagaacgatggaggcgatcgcagcgggaaaaggcaggaagcca
acgccattcatgatgcagaatggcgacgtcgaggcggatgcggtgtggaacagcaatcac
gttttcgcggccgaggagcgcaaagcgggcgtgaagactgcaaaaaagccgtcggccggc
aagcgtgcgaactccaccatgccggttttcgtcccaccgcagctgtgcgaaaccctggcg
cgcccgccatctgccgatggctggattcatgagatcaaattcgacggctatcgcatccag
atgcgagttgaggatggcgaggcaaccctcaaaacccgcaagggtctggactggacggcc
aaatatccggccatcgccgcctcagcgtccgctcttcccgacgccatcattgatggagag
atctgcgcgctcgacgaaaccggcgccccggattttgctgcgctccaggcggcgctctcg
gaaggaaagaccgataatttggtctactttgcattcgacctcctcttcgtgggaggcgaa
gatttgcgcgagctgccgctcacagaacgcaaggaacgcttggcgacgttcttgtcggat
gccggcgaagatccgcgtctacacttcgtcgagcatttcgaaaccggtggcgacgcggtt
ctcagatccgcctgtcgtttgtcgctggaggggatcgtctcgaaacaggctgacgcacct
tatcaatcgggccgcaccgagacatgggccaagtcgaaatgccgggcagggcatgaagtc
gttatcggcgcctatgcgaaaaccaatggcaagttccgatcactgctcgtcggcgtccat
cgcggcaaccattttgtctatgtcggccgggtcggcacgggttatggagcgaaggtcgtc
gacacgctcttgcccaagctgcaggcgatggagacatcggagtcgccgttcaccggtatc
ggtgcgccgaagaagagccctgatatcgtttggctaaaaccagaactcgtcgccgagatc
gagtttgccggctggacggccgatggccaggtgcgccaagcggcgttcaagggcttgcgg
gaagataagcctgcggcagaagtcgaggccgagaagccggcctcaccagccaaaaccgag
gtgcccgatcccgagacttcgaaaccggcgcctgcgcgtttccgcaagggcgcgaaggtg
gaggtgatgggcgtgatgatctccagccccgacaagccgctatggccggatgccggtgac
ggagagccggtgactaaggtcgatctggcgcactaccacgaagccgtcggttcctggttg
atcgaccatatcaaggggcggccatgctcaatcattcgcacaccggacggcattggcgga
gagcagttcttccagcgccatgcgatgccggggacatcgaacctgctggaactggtcacg
gtgtttggcgacaagaagccctacctacagatcgatcgcgtcgagggtcttgcggcaatc
gcccagatcggcggcgtcgagctgcatccgtggaactgtgagcctaatcagccggaagtg
cccggccgtctggtgtttgacctcgatcctggacctgatgtcgatttctccaccgtcgtc
gcagcggctcgtgaaatccgcgaccggctggaggagctcgggctcgtcagcttctgcaag
acgacgggcggcaaaggactgcacgtggtgacgccgcttgctgtgccgaagagcaagaaa
ctcagctgggacatcgcgaagggtttcgcccatgatgtttgcgaacagatggcgcgcgac
aatccggatctttacctgatcaaaatggccaagaatcagcgtgaggggcgcatctttctc
gactacctgcgcaacgatcgcatggcgacggctgtcgcacctttgtctccacgagcgcgg
cccggcgccgccgtgtcgatgccgttgacgtggacgcaggtaaagtctgatctcgacccc
aagcggttcacggttcgcacagttcctgcgctgcttgcgaaaagcgccgcgtggcaggat
tattgcgatggtcagcgaccgcttgagcaggcgatcaagcgcctcggaaaattaaagcag
gcagcgtga

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