Rhizobium leguminosarum bv. trifolii WSM1325: Rleg_5638
Help
Entry
Rleg_5638 CDS
T00926
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlg
Rhizobium leguminosarum bv. trifolii WSM1325
Pathway
rlg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Rleg_5638
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlg03400
]
Rleg_5638
Enzymes [BR:
rlg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Rleg_5638
DNA repair and recombination proteins [BR:
rlg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Rleg_5638
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACS60446
UniProt:
C6B958
LinkDB
All DBs
Position
pR132503:complement(222642..225290)
Genome browser
AA seq
882 aa
AA seq
DB search
MSDNLSKYRAKRDFKKTGEPSGEAQVKPSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWELEGNRTPEE
ALARGDFKFKLEGKRLHGGFVLVRMRNDRDGGKRTNWLLIKHHDDFSVEENGAAILEEND
TSVASARTMEAIAAGKGRKPTPFMMQNGDVEADAVWNSNHVFAAEERKAGVKTAKKPSAG
KRANSTMPVFVPPQLCETLARPPSADGWIHEIKFDGYRIQMRVEDGEATLKTRKGLDWTA
KYPAIAASASALPDAIIDGEICALDETGAPDFAALQAALSEGKTDNLVYFAFDLLFVGGE
DLRELPLTERKERLATFLSDAGEDPRLHFVEHFETGGDAVLRSACRLSLEGIVSKQADAP
YQSGRTETWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVHRGNHFVYVGRVGTGYGAKVV
DTLLPKLQAMETSESPFTGIGAPKKSPDIVWLKPELVAEIEFAGWTADGQVRQAAFKGLR
EDKPAAEVEAEKPASPAKTEVPDPETSKPAPARFRKGAKVEVMGVMISSPDKPLWPDAGD
GEPVTKVDLAHYHEAVGSWLIDHIKGRPCSIIRTPDGIGGEQFFQRHAMPGTSNLLELVT
VFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPNQPEVPGRLVFDLDPGPDVDFSTVV
AAAREIRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKSKKLSWDIAKGFAHDVCEQMARD
NPDLYLIKMAKNQREGRIFLDYLRNDRMATAVAPLSPRARPGAAVSMPLTWTQVKSDLDP
KRFTVRTVPALLAKSAAWQDYCDGQRPLEQAIKRLGKLKQAA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaatctttcgaaataccgcgccaagcgcgatttcaagaagaccggcgagccg
agcggcgaggcccaggtgaagccgtcgaaccgccggcggtttgtgatccagaagcacgac
gctacccggttgcattatgaccttcggctcgaactcgacggcgtctttaaatcctgggct
gtgaccaagggcccgtcgctcgacccgcacgacaagcggctggccgtcgaagtcgaagac
catcccttggactacggggatttcgaaggcacgatcccgaaaggccagtatggcggcggc
accgtgatgttgtgggaccgcggctactgggagctcgagggcaacaggacgccggaagaa
gcgctcgctaggggcgatttcaagttcaagctggagggtaagcgcctccatggcggtttc
gttctggtgcgcatgcgcaacgaccgcgatggcggcaaacggaccaactggctgctgatc
aagcatcatgacgatttctcggtcgaggagaacggcgcggccatcttggaggaaaacgat
acgtccgtggcgtccgcgagaacgatggaggcgatcgcagcgggaaaaggcaggaagcca
acgccattcatgatgcagaatggcgacgtcgaggcggatgcggtgtggaacagcaatcac
gttttcgcggccgaggagcgcaaagcgggcgtgaagactgcaaaaaagccgtcggccggc
aagcgtgcgaactccaccatgccggttttcgtcccaccgcagctgtgcgaaaccctggcg
cgcccgccatctgccgatggctggattcatgagatcaaattcgacggctatcgcatccag
atgcgagttgaggatggcgaggcaaccctcaaaacccgcaagggtctggactggacggcc
aaatatccggccatcgccgcctcagcgtccgctcttcccgacgccatcattgatggagag
atctgcgcgctcgacgaaaccggcgccccggattttgctgcgctccaggcggcgctctcg
gaaggaaagaccgataatttggtctactttgcattcgacctcctcttcgtgggaggcgaa
gatttgcgcgagctgccgctcacagaacgcaaggaacgcttggcgacgttcttgtcggat
gccggcgaagatccgcgtctacacttcgtcgagcatttcgaaaccggtggcgacgcggtt
ctcagatccgcctgtcgtttgtcgctggaggggatcgtctcgaaacaggctgacgcacct
tatcaatcgggccgcaccgagacatgggccaagtcgaaatgccgggcagggcatgaagtc
gttatcggcgcctatgcgaaaaccaatggcaagttccgatcactgctcgtcggcgtccat
cgcggcaaccattttgtctatgtcggccgggtcggcacgggttatggagcgaaggtcgtc
gacacgctcttgcccaagctgcaggcgatggagacatcggagtcgccgttcaccggtatc
ggtgcgccgaagaagagccctgatatcgtttggctaaaaccagaactcgtcgccgagatc
gagtttgccggctggacggccgatggccaggtgcgccaagcggcgttcaagggcttgcgg
gaagataagcctgcggcagaagtcgaggccgagaagccggcctcaccagccaaaaccgag
gtgcccgatcccgagacttcgaaaccggcgcctgcgcgtttccgcaagggcgcgaaggtg
gaggtgatgggcgtgatgatctccagccccgacaagccgctatggccggatgccggtgac
ggagagccggtgactaaggtcgatctggcgcactaccacgaagccgtcggttcctggttg
atcgaccatatcaaggggcggccatgctcaatcattcgcacaccggacggcattggcgga
gagcagttcttccagcgccatgcgatgccggggacatcgaacctgctggaactggtcacg
gtgtttggcgacaagaagccctacctacagatcgatcgcgtcgagggtcttgcggcaatc
gcccagatcggcggcgtcgagctgcatccgtggaactgtgagcctaatcagccggaagtg
cccggccgtctggtgtttgacctcgatcctggacctgatgtcgatttctccaccgtcgtc
gcagcggctcgtgaaatccgcgaccggctggaggagctcgggctcgtcagcttctgcaag
acgacgggcggcaaaggactgcacgtggtgacgccgcttgctgtgccgaagagcaagaaa
ctcagctgggacatcgcgaagggtttcgcccatgatgtttgcgaacagatggcgcgcgac
aatccggatctttacctgatcaaaatggccaagaatcagcgtgaggggcgcatctttctc
gactacctgcgcaacgatcgcatggcgacggctgtcgcacctttgtctccacgagcgcgg
cccggcgccgccgtgtcgatgccgttgacgtggacgcaggtaaagtctgatctcgacccc
aagcggttcacggttcgcacagttcctgcgctgcttgcgaaaagcgccgcgtggcaggat
tattgcgatggtcagcgaccgcttgagcaggcgatcaagcgcctcggaaaattaaagcag
gcagcgtga
DBGET
integrated database retrieval system