Roseobacter litoralis: RLO149_c018000
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Entry
RLO149_c018000 CDS
T01572
Symbol
hfq
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
rli
Roseobacter litoralis
Pathway
rli02024
Quorum sensing
rli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RLO149_c018000 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RLO149_c018000 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rli03019
]
RLO149_c018000 (hfq)
03036 Chromosome and associated proteins [BR:
rli03036
]
RLO149_c018000 (hfq)
Messenger RNA biogenesis [BR:
rli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
RLO149_c018000 (hfq)
Chromosome and associated proteins [BR:
rli03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
RLO149_c018000 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Motif
Other DBs
NCBI-ProteinID:
AEI93790
UniProt:
F7ZIS1
LinkDB
All DBs
Position
1848076..1848315
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AA seq
79 aa
AA seq
DB search
MASDRQNLQDAFLNHVRKTKVPVTIFLINGVKLQGVITWFDNFCVLLRRDGQSQLVYKHA
ISTIMPSQPISLYEGEDAS
NT seq
240 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggacagacagaaccttcaggatgcgttcctgaaccatgtgcgcaagacaaaa
gttcctgtgaccatctttctaatcaacggtgtaaaactgcagggcgtgatcacgtggttt
gacaatttttgcgtgttgctgcgccgggatggtcaatcacagctggtgtataagcatgcg
atttcgaccatcatgccaagccaacccatcagtctgtatgagggcgaagacgcttcttga
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