KEGG   Roseobacter litoralis: RLO149_c029030Help
Entry
RLO149_c029030    CDS       T01572                                 

Definition
(GenBank) putative ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rli  Roseobacter litoralis
Pathway
rli03030  DNA replication
rli03410  Base excision repair
rli03420  Nucleotide excision repair
rli03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rli00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RLO149_c029030
   03410 Base excision repair
    RLO149_c029030
   03420 Nucleotide excision repair
    RLO149_c029030
   03430 Mismatch repair
    RLO149_c029030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rli03032]
    RLO149_c029030
   03400 DNA repair and recombination proteins [BR:rli03400]
    RLO149_c029030
Enzymes [BR:rli01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RLO149_c029030
    6.5.1.6  DNA ligase (ATP or NAD+)
     RLO149_c029030
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     RLO149_c029030
DNA replication proteins [BR:rli03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    RLO149_c029030
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     RLO149_c029030
DNA repair and recombination proteins [BR:rli03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     RLO149_c029030
   NER (nucleotide excision repair)
    Other NER factors
     RLO149_c029030
   MMR (mismatch exicision repair)
    Other MMR factors
     RLO149_c029030
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AEI94860
UniProt: F7ZH18
LinkDB All DBs
Position
2961650..2963248
Genome map
AA seq 532 aa AA seqDB search
MKEFAALFNAIDQSTKTTVKTAALAAYFAKAPKEDRLWTIAIFSGRRPKRAVTTTKLREW
AAEMADIPLWLFEENYPIVGDLAETIALVLPDTTSTNDTSLSDWIAALRALSEADDAQRK
AFVRDAWAELGGTERFVFNKLITGGFRLGISQKLMTRALSKATGKPETELAHRLMGNWHP
DDTTWDVLIEADDPMADASRPYPFYLSYGLEGAVEDLGAPSEWVAEWKWDGIRGQLILRD
GQYFVWSRGEELMTDRFPELAQAVDFFPAGTVLDGELLVWEAGADAPSSFNALQKRIGRK
TVPKKLLAEAPVVLHAYDVLEWQGVDIRQRPFAERRAILQAACTALPATAPIKLSPQLSF
QDWDSLAQHRGAARDAQAEGVMLKRADSPYLVGRKKGDWWKWKLDPLTIDAVMIYAQAGH
GRRANLFTDFTFAVRHGNDLVPFTKAYSGLTDAEFRAITAWVRKNTLQRFGPVRQVTPHH
VFEIAFEGIQASPRHKSGVALRFPRMARWRQDKPLQEANTLDDLKQMLELYG
NT seq 1599 nt NT seq  +upstreamnt  +downstreamnt
gtgaaagagtttgcagcgcttttcaatgcgattgaccaaagcaccaagaccaccgtcaaa
acggcggcactggcggcatattttgccaaggccccgaaagaggaccggttgtggacaatc
gccatcttttcaggtcgcagaccgaaacgggcagtgaccaccaccaagctgcgcgaatgg
gcggctgaaatggccgatatccccttatggcttttcgaggaaaattatccgatcgtcggc
gatcttgccgaaacgatcgccctggttttacccgacacgaccagcacgaacgacacatcc
ctatctgattggatcgccgcattacgcgctctgtcagaggcagacgacgcacagcgcaaa
gccttcgtgcgcgatgcatgggcagagcttggcggcacagagcgttttgtgttcaacaag
ctgatcaccggcggttttcgccttgggatcagtcaaaagctgatgacgcgcgcgctgtca
aaggcgacgggcaagcctgaaaccgagctggcgcatcgcctgatgggcaactggcacccg
gatgacaccacatgggacgtcctgatcgaggcagacgacccgatggcggatgcctcgcgc
ccctaccctttttatctatcctatgggctggaaggggcggttgaagacctcggcgcaccg
tcggaatgggtcgcggaatggaaatgggacggcattcgtggccagttgatcctgcgtgac
gggcagtacttcgtatggtcgcgcggcgaggagttgatgacggaccgctttcccgaactg
gcgcaggcggtcgacttttttccggcaggcaccgtgctggacggcgaattgctggtctgg
gaggcgggtgccgacgcgccctccagtttcaatgcgctgcaaaaacggatcgggcgcaaa
acggtgccgaaaaagctgctcgcagaagcgcccgtcgtgctccacgcctatgatgtgctg
gaatggcagggcgtggatattcgccaacgtcccttcgcagaacggcgcgcgatcctgcaa
gccgcctgcacggccctgcccgcaacagcgccgataaaactatccccccagctctcattt
caagactgggacagtctcgcgcaacatcgcggtgctgcgcgcgatgcacaggccgaaggg
gtgatgctgaaacgcgccgacagcccctatctcgtgggacgcaaaaagggggactggtgg
aaatggaaacttgatccgctgaccattgatgccgtgatgatctatgcgcaggccggacat
gggcgacgcgcgaacctctttaccgatttcacctttgccgtgcgccatggcaatgacctc
gtgccgttcaccaaagcctattccggtctgacggatgccgaattccgcgccattaccgca
tgggtgcgtaagaacacgctccagcgttttggcccggtgcgacaagtgacgccgcaccat
gtctttgaaatcgcctttgaaggtattcaggccagcccgcgccataaatccggcgtggcg
ctgcgcttcccgcgcatggcgcggtggcgacaggacaaacccctgcaagaggccaacacg
ctggatgacctcaagcagatgcttgaactatatggctga

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