Rhizobium leguminosarum bv. trifolii WSM2304: Rleg2_5705
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Entry
Rleg2_5705 CDS
T00779
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlt
Rhizobium leguminosarum bv. trifolii WSM2304
Pathway
rlt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Rleg2_5705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlt03400
]
Rleg2_5705
Enzymes [BR:
rlt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Rleg2_5705
DNA repair and recombination proteins [BR:
rlt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Rleg2_5705
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACI58880
UniProt:
B6A397
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All DBs
Position
pRLG202:103682..106333
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AA seq
883 aa
AA seq
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MASDNLSTYRSKRDFKKTAEPSGEKQIARSNRRRFIIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGKKSPE
QALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHHDAFSVEENGAAVLEEN
DTSVASGRTMDAIATGKGRKPKPFMIKGGDIKADAVWDSNQGLAAEERKEEGRAGRTPKT
AAKVDLPDFIAPQLCQTLERPPAGEGWIHEIKFDGYRIQMRILDGEVTLKTRKGLDWTGK
YPEVAEAASALPDAIIDGEICALDDHGVPDFAALQAALSEGRTGDLVYFAFDLLYEGGED
LRSLPVIERKARLQSLLADAGDDPRLRFVEHFETGGDAVLRSACKLSLEGIVSKQSDAPY
QSGRTDSWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVYRGDHFVYVGRVGTGYGAKKVE
TLLPKLQALETAKSPFTGIGAPKKEAEVTWVKPKLVAEIEFAGWTADGIVRQAAFKGLRE
DKPAREVKAERPAKPAETDVPEPEPAAEVKARPARRKGAKAEVMGVMISNPDKPLWPDAN
DRKPVTKEELARYYEAVGGWMIAHIEGRPCSIIRAPDGLGGEQFFQRHAMPGTSNLLELV
KVFGDKKPYLQIDRVEGLAAVAQIGAVELHPWNCQPHKPEVPGRLVFDLDPGPDVPFSTV
VSAAREMHDRLDALGLVSFCKTTGGKGLHVVTPLAINKRKPLSWAEAKSFAHDVCQQMAR
DNPDLYLIKMTKSLRNGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLD
PKRFTIRTVPALLSKSSAWEDYSDGQRPLEQAIKRLSKVSNAA
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgacaacctctcgacataccgatcgaagcgcgactttaaaaaaacggcggag
ccgagcggcgagaagcagatcgcgcgcagcaatcgccgtcgtttcatcatccagaaacat
gacgccacccggctgcattacgacctgcggctcgagctcgacggcgtcttcaaatcctgg
gctgtcaccaaaggcccttcgctcgatccgcacgacaagcggctggccgtcgaggtcgaa
gatcacccgctcgattatggtgattttgaaggcacgatcccgaaagggcaatatggcggc
ggcacggtgatgttgtgggaccgcggctattgggagcctgagggaaagaagagcccggag
caggcgcttgccaagggcgacttcaagttcaccctcgaaggcgaaaggctgcacggcagc
ttcgtcctggtgcgcatgcgcaatgaccgcgacggcggcaagcgaaccaactggctgctg
atcaagcaccacgacgcgttctcggttgaggagaatggcgcagccgtcctggaggagaac
gacacctccgtcgcctccggccggacgatggatgcgatcgccacgggcaagggccgcaag
ccgaagccgttcatgatcaagggcggggatatcaaggcggatgcggtctgggacagcaac
caggggctggccgccgaagagaggaaagaggagggtcgagccggcaggacgccgaaaacg
gcggcaaaggtcgacctcccggatttcatcgcgccacagctttgccagaccctggagcgg
ccgccggccggcgagggctggattcacgagatcaagttcgacggctaccgtatccagatg
cgcatactcgacggcgaggtaacgctgaagacccgcaaagggcttgactggaccggcaaa
tatccagaggtcgccgaggcggcatcggcgctgcccgacgccatcatcgacggcgagatc
tgcgctctcgacgaccatggcgtaccggatttcgcagccctgcaggccgccctttcggaa
ggccggaccggcgatctcgtctatttcgccttcgatcttctttacgagggtggcgaggac
ttgcgatccttgcctgtgatcgagcgcaaggcgcggcttcagagcctgcttgcggatgcc
ggtgacgaccctcggctccgtttcgtcgagcatttcgagaccggcggcgatgcggtcctt
cgctccgcctgcaagctctccctggaaggcatcgtctccaagcagagcgatgcgccctat
caatccggccgcaccgacagctgggccaagtcgaaatgccgcgccggccacgaagtggtg
atcggcgcctatgccaagaccaacggcaaattccgatcgctgctggtcggcgtctaccgc
ggcgaccacttcgtctatgtcggccgcgtcggcacgggatatggcgccaagaaagtggaa
acgttgcttccgaaactgcaagcgctcgagacggcaaaatcgcccttcaccggcatcggt
gcgccgaagaaggaggccgaggtcacttgggtgaagcccaagctcgtggcggaaatcgag
ttcgccggctggaccgccgacggcatcgtccgccaggcggccttcaagggcctgcgggag
gacaagcccgccagggaggtcaaggccgaacggccggccaagccagcggagaccgacgtg
ccggagccggagccggcggcggaggtgaaggcgaggccagcccgccgaaagggcgccaaa
gccgaggtcatgggcgtgatgatctccaatccggacaagccgctttggccggatgccaat
gaccgcaaaccggtgaccaaggaggagctggcccgctattatgaagccgtcggcggctgg
atgatcgcgcatatcgaggggcgcccctgttcgatcatccgtgcgcccgatgggctgggc
ggcgagcagttcttccagcgccatgcaatgcccggcacctcgaaccttctcgaactggtc
aaggtcttcggcgataaaaagccctatctgcagatcgaccgggtcgagggcctagcggct
gtcgcgcagatcggcgccgtcgagttgcacccctggaattgccaaccgcacaagccggag
gtgccgggccggctggtgttcgacctcgaccctggccccgacgtgccgttctcgacagtc
gtttccgccgcccgcgagatgcacgatcggctcgacgcgctcggtctcgtcagtttctgc
aagaccacaggcggcaagggcctgcacgtcgtcacgccgcttgcgatcaataagcgcaag
ccgctttcctgggcagaggcgaagagttttgcgcacgacgtctgccagcagatggcgcgc
gacaatcccgatctctatctgatcaagatgaccaagagcctcaggaacggccgtatcttc
ctcgactatctccgcaacgaccggatggcgacggccgtggcgccattgtcgccccgtgcc
cggccgggcgccaccgtctcgatgccgctgacctggacccaggtcaaatccgatctcgac
ccgaaacgctttaccatccgcaccgtgccggcactgctgtcgaaatcgtcggcctgggaa
gattatagcgatggccagcgcccgctggagcaggcgatcaaacggctgagcaaagtctcg
aacgcggcgtga
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