Rhizobium leguminosarum bv. trifolii CB782: RLEG12_18745
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Entry
RLEG12_18745 CDS
T03015
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rlu
Rhizobium leguminosarum bv. trifolii CB782
Pathway
rlu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rlu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RLEG12_18745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rlu03400
]
RLEG12_18745
Enzymes [BR:
rlu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RLEG12_18745
DNA repair and recombination proteins [BR:
rlu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RLEG12_18745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Glyco_hydro_65C
Motif
Other DBs
NCBI-ProteinID:
AHG45143
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All DBs
Position
1464032..1465081
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AA seq
349 aa
AA seq
DB search
MTTTPRKPSMPLLGEADAPLRGRPRRRRDPAQPELSLDPMPARIDPCLALLKPRPPKGQQ
WAFEVKWDGYRLAVHIEPSGVRILTRGGHEWTDRFAAIAAEARRLPVSTAILDGEAVVFD
ELGRSDFGALQQSLGGRGGKRTSREAVLMVFDLLYFDGRDLMRSELSARRHLLEGLVPAG
GEAAIRLSEEIEADGEQLLRVACEHGLEGIIAKDRNSLYRSGRLGDWLKIKCVKSDGFAI
IGYEKSSASFGGIGRLLLAARKGDELVYVGGVGTGFNERSAAELRERMDKRIIGKPAVNT
GRKRNAVYVHPELVAEIQYRAWTHDGKLRHPSYKGLRDAADEAAVYDLG
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgacgccccgcaagccatccatgccgctgctcggtgaagccgacgcgccgctc
cgcggccggcctcgacggcgccgcgatcccgcccagccggagctctcccttgatcctatg
cctgcccgcatcgatccctgccttgcactgctcaagccgcgcccgccgaagggccagcag
tgggccttcgaggtgaaatgggatggctatcgcctggccgtccacatcgaaccgtcgggc
gtccgcatcctgacacgcggcggccatgaatggaccgaccgcttcgctgcgatcgcagcc
gaggcgcggcgcctgcctgtttcaacggcgatactggatggcgaggccgtggtgttcgac
gagctcggccgatcggatttcggcgcgcttcagcagtcgctcggtggacgcggcggaaag
cggacgtcgcgcgaagcggtcctgatggtcttcgacctcctctacttcgatgggcgcgac
ctcatgcgctccgagctttccgcgcggcgccatctcctagaggggctggtgccggccggc
ggggaggcggccataagactatccgaggagatcgaggccgatggcgagcagttgctccgc
gtcgcgtgcgagcatggacttgaagggatcatcgcgaaagatcgcaatagcctgtatcgc
agcggccgcctcggcgattggctcaagatcaaatgcgtcaagagcgacggctttgcgatc
atcggttatgagaagtcctctgcatcgttcgggggtatcgggcggcttctgctcgccgcg
cgcaagggcgatgaactcgtctatgtcgggggagtgggaaccggcttcaacgagcgttcc
gccgccgagctacgggagcggatggacaagcggatcatcggtaagcccgcggtcaatacc
ggcaggaagcgaaatgcggtgtacgtccacccggagcttgttgccgagatccagtatcgg
gcctggactcatgatggaaagctgcggcacccctcatataaggggctgagggatgcggct
gatgaggcggctgtttatgatttgggataa
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