Rhopalosiphum maidis (corn leaf aphid): 113557548
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Entry
113557548 CDS
T06065
Name
(RefSeq) paired amphipathic helix protein Sin3b
KO
K11644
paired amphipathic helix protein Sin3a
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
113557548
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rmd03036
]
113557548
Chromosome and associated proteins [BR:
rmd03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
113557548
REST complex
113557548
Heterochromatin formation proteins
Other heterochromatin formation proteins
113557548
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
GlutR_dimer
Motif
Other DBs
NCBI-GeneID:
113557548
NCBI-ProteinID:
XP_026818933
LinkDB
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Position
4:15846763..15850976
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AA seq
1184 aa
AA seq
DB search
MKRHSDEHMASADTVGAYATAAATRSPPRSRPNLVTISNVVQSNFVSQAINNPNIQFNTV
QPFSAPTMPVLAINEKVPGSLPGGSAMPALHTIQAQHTIQQIRQKVVPPTTIIQQQQQQQ
QQQQTQFQRLKVEDALSYLDQVKYKFSNQPQVYNDFLDIMKEFKSQSIDTPGVITRVSNL
FKGHPELIVGFNTFLPPGYKIEIKNNELGFHVSVSIPQSPAITSSQTIIHSTTQHIMSST
PIVTAPPVTLTTTPPVVIKPAGHLPAINQVNTTSVVINHHTTHNSVTPTAPTSNVHPTQI
PLSVASLSQVASNIPQVSIPTTQESTNSQNQPVEFNHAINYVNKIKNRFQGQPEKYKRFL
EILHTYQKEQKTHKDNVPVAEKTLTEAEVYQQVAKLFENQDDLLLEFGQFLPDAKTPDAK
QAAETSIVPPKKTTVVTSAPPAIPLPPPPPIKKEHPASIPITKEIVKESSVPNVAIKRTS
SFSSSQNLPPPKKPKSPFPSLGDVSYQEAYKYGTLTDFAFFDLVRKSIHNASAYDDFLRC
LVLYYTEIISKSELLNLVQPFLGKYSELFRRFKDFIGTSEKSNNAAAIPTENKLCGLPHF
SLLDPGSNRQDRSAGDLPTDIDYSICKRLGASYCAVPSDYLTPKCSGRTKMCYEVLNDTW
VSFPTWSEESSFATSRKTQYEEYMHRCEDERFELDLVMEINLAAIYCLEELSRRFSRMTP
EEISKFKLEDCSFGSDTTSMTTNRRAIKRLYGDKTSDILEGLQKNPLSAVPIVLKRLKSK
NEEWKLARNTFNEIWKSQNEKYYLKSLDHQGVNFKQSDMKFLRSKSLLNEIEALYDERNE
QSDTSTGPHLVFSYVDKSIIDDAANLLIHHVKRQASINKEDKQKIKSLIRRFIPDMFHHP
RQELSDDERDGQNDCSNNNSPETTKASLRISEEKDLPELKITDNDKLKAPDHSSTEECYT
LFYGNNNWYLFLRLHHILCDRLTQIYKKASQLLHDECIYQVTRSETAAEKLNLNPNSPIL
LEDYYPALLDMIKNVLDGNMDSNTYEDTLREMFGIHAYVGFTLDKVVVYAVRQLQHLVSD
EYCQECYNLFIKESKKNGTGGLCSTACQRIAQEAAYQRRAEAALSNDNNCYKIFIYKSNC
KLTFELLDTDTDDNQDSGKWTSFDNEPLSETNDDKQEENQSPKN
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggcattcggatgaacacatggcgtccgcggacactgtcggcgcatacgccacc
gccgccgcgacccgttcaccgcctaggtccaggcccaacctggtaaccatttccaatgtt
gtccagtcgaatttcgtttcgcaggccataaataatccaaacattcaattcaataccgtg
cagccgttcagcgcgcccacaatgccggtcctagccatcaatgaaaaggttccaggttcg
ttacctggtggctccgccatgccagccctccacacgatacaggcgcaacacactattcag
cagataaggcaaaaagtcgttccgcccacgaccataattcaacagcaacagcaacagcag
cagcaacagcagactcagtttcagaggctcaaggtcgaagatgccctgtcctatttggat
caggtgaaatataaatttagtaatcaacctcaagtgtacaatgacttcttggacataatg
aaagagttcaaatcacagagcatagacacccccggagtgataacacgggtctcaaaccta
ttcaaaggtcatcctgagctcatagttggtttcaatacgttcctacctccgggttataaa
atagaaataaaaaataatgaacttggctttcatgtttctgtgtcgatacctcaaagtccg
gcaatcacatcttcccagacaataatacattcgacaactcaacatataatgtcaagtact
ccaatagttactgctccacctgtcactttgactaccacaccgcctgtagtaattaaacca
gccggacatttacctgccataaatcaggtcaatactacttcggttgtaataaatcatcat
acgacgcacaatagtgtgacacctactgcgcctactagcaatgttcatccaactcaaata
cctttgtctgtagctagcttaagccaagtggcatcgaatatacctcaagtgtcgatacct
acaactcaggaatcaaccaactcacaaaatcaaccagttgagtttaatcacgccataaat
tatgttaataaaataaaaaatcgttttcaagggcaaccagaaaaatataaaagattttta
gaaatattacatacttatcaaaaagagcaaaaaactcataaagataatgtgccagtggca
gaaaaaacattaactgaagccgaagtatatcagcaagttgccaaattgtttgaaaaccaa
gatgatttactattggaatttggacagtttctacctgatgctaaaactcctgatgccaaa
caagcagcagaaactagcattgtccctcccaagaagactaccgttgttactagtgcacct
cctgcaattcctttgccaccaccaccccccattaaaaaagaacatccggcctctattcca
attactaaggaaattgtaaaagaatcaagtgttccaaacgtagctatcaaaagaacttcg
tcgttttcttccagtcagaatttaccaccgcccaaaaaaccaaaatctccatttccaagc
ttgggagatgtatcttatcaagaagcatataaatacggtacattaacagactttgcattt
ttcgatctcgttaggaaatcaattcataatgcttccgcgtatgatgatttcttgaggtgc
ttagttttgtattacactgagatcatatcaaaatcagaactgcttaatttagtgcagcct
ttccttggaaaatactcagaattatttagaagattcaaagattttattgggactagtgaa
aaaagcaataatgctgccgcaattccaacagaaaataaactttgtggcttaccacatttt
tcattgcttgatcctggatctaatcgccaagatagatctgctggtgatctacctactgac
atcgattatagcatttgtaaaaggttaggtgcaagttattgtgctgtaccctcagattat
ttaactcccaaatgtagtggtaggacgaaaatgtgttatgaagtactgaatgacacgtgg
gtttctttccctacgtggtctgaagaatcatcatttgccactagtcgaaaaactcaatat
gaagaatatatgcacaggtgtgaagatgaaagatttgaacttgatctcgtaatggaaatt
aatttggcagcaatatattgtttagaagaactatcaagaagatttagtagaatgacacct
gaagaaatatcaaagtttaaattggaagattgtagttttggtagtgatacaacttcaatg
acaactaatagacgagctattaaaagattatatggtgataagacatcagatatacttgaa
ggacttcaaaaaaatccattatctgctgttccaatagttttaaaaaggttaaaatccaaa
aatgaagaatggaaattagcacgaaatacttttaatgaaatatggaaaagtcaaaatgaa
aagtattatcttaaatcattagaccatcaaggtgttaattttaaacaaagtgatatgaaa
tttctcagatcaaaatcgttactaaatgaaattgaagctttatatgatgagcgtaatgaa
cagagtgatactagcactggacctcatttggtgttttcatatgtcgataaatcaattata
gatgatgctgctaatttgttgattcatcatgtcaagagacaagcaagtattaataaagaa
gataaacaaaaaataaaatcgcttattagaaggtttatacccgatatgtttcatcatccg
aggcaagagttaagtgacgatgaacgtgacggtcagaatgattgttctaataataattca
cctgaaacaactaaagcatctttgaggatttctgaagaaaaagatttacccgagcttaaa
ataactgacaatgataaattaaaagcacctgatcattctagtacagaagaatgttacact
ttattttatggcaataataattggtatttgttcctcagactacatcatatactatgtgat
cgccttactcagatatataaaaaagcctcacaattacttcatgacgaatgtatttatcag
gtgactagatctgagactgcagctgaaaagcttaatctcaatcccaattcaccgattctg
ttagaagactattatcctgctctactcgatatgattaaaaatgtcctggatggcaatatg
gattcaaatacatatgaagacacgctaagagaaatgtttggtatccacgcatatgtagga
tttacacttgataaggttgttgtttatgctgttcgtcagttgcagcatttagtgtctgat
gaatactgtcaagaatgttataatttatttataaaagaaagtaaaaagaacgggacaggt
ggtctttgcagtacagcatgtcaaagaattgcacaagaagcagcatatcaacgtagagct
gaagctgccttgagtaatgataataattgctataaaatatttatatacaaatctaactgt
aaactaacgtttgagttgctggacactgacacagatgataatcaagacagtggtaaatgg
acaagttttgataatgaaccactatctgaaactaatgatgataaacaagaagaaaaccaa
agtcctaaaaattaa
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