Cupriavidus metallidurans: Rmet_2092
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Entry
Rmet_2092 CDS
T00351
Symbol
rnr
Name
(GenBank) exoribonuclease R, RNase R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rme
Cupriavidus metallidurans
Pathway
rme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rmet_2092 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rme03019
]
Rmet_2092 (rnr)
03016 Transfer RNA biogenesis [BR:
rme03016
]
Rmet_2092 (rnr)
Enzymes [BR:
rme01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Rmet_2092 (rnr)
Messenger RNA biogenesis [BR:
rme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rmet_2092 (rnr)
Transfer RNA biogenesis [BR:
rme03016
]
Prokaryotic type
tRNA degradation factors
Rmet_2092 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
HTH_12
HTH_11
CSD
Motif
Other DBs
NCBI-ProteinID:
ABF08971
UniProt:
Q1LLK5
LinkDB
All DBs
Position
complement(2270745..2273375)
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AA seq
876 aa
AA seq
DB search
MNQNNYPIPSREEILGVLRTSGSPLSAGDIAKALAVTRKEHDGFQKRLAAMERDGQIELN
RKGRYELAHQPNFVLGRVQGHRDGFGFLIRDDGEDDIFLPERELQKAMHNDRAQVRVVGY
DRRGRPEGQIVEIVERANRFVIGRLLSENGVLVVAPEDKRIGQDILIPPKAQGKARVGQV
VSVELMEWPDRYVQPVGRVVEVIGDIDDPGMEIEIAVRKYGVPHQFSPAAVKEAQGLPDE
VRQADLDHRIDLRDIPLVTIDGEDARDFDDAVYCEQVKIGRAKGWRLIVAIADVSHYVRP
GTPLDADALDRATSVYFPRRVIPMLPEKLSNGLCSLNPNVDRLCMVCDAVITAKGELKGY
QFYPAVMHSAARLTYNEVWSVLSNTKGPEAHKRAELVPHLQNLYELFQVLLKARRARGAI
DFDTTETYIVCNAQGKIEQILPRTRNDAHRLIEECMLTANVCAADFLERFKHPALYRIHA
GPSEEKLKNLREFLKTAGLSLGGGDKPQASDYAEVMDKIKSRPDAPMLQTMLLRSMQQAV
YSPDNIGHFGLAYEAYAHFTSPIRRYPDLLVHRSIKAILAHTKYRPAFIQGTELNTQISP
KARRMQAADAEKRAENVAARAKRDEGVWDELGLHCSANERRADEASRDVEAWLKCYFMRD
KLGSDFAGTISAVTSFGIFVQLDELYVEGLVHVTELGSDYFQYDEARNELRGERTGIRYR
LTDRVRVQVSRVDLDARKIDFRLVQEPSAKTLRARAGVPEQPRVPAAHAVPARKKGRQLA
ALLGGTSKPEESFDETLDRVIEEQPVFEAVITPLKPRDAHVGHAPHGRGSAKKAQSGKPA
KRAAKPKPAHLKTERQPTTKRAPKPAGKSTRPARKR
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
ttgaatcagaacaactatccgatccccagccgggaagaaatccttggcgtactgagaact
tcggggtcgcccctgtcggccggcgatatcgccaaggccctggccgtcacgcgcaaagag
catgacggctttcagaaacggctcgccgcgatggaacgcgacggccagatcgaactcaat
cgcaagggccgctatgagctggcccatcaacccaatttcgtgcttggccgcgtgcagggc
catcgggacggcttcggcttcctgattcgcgacgacggcgaggacgatatcttcctgccc
gagcgcgagctgcagaaggcgatgcacaacgatcgcgcgcaggtgcgcgtggttggctat
gaccgacgcggccgtccggaagggcagatcgttgagatcgtggagcgtgccaatcgcttc
gtgatcggccgactgctgtccgaaaatggcgtgcttgtggtggcgccggaagacaagcgc
attggccaggacatcctgattccgcccaaggcccaaggcaaggcgcgcgtggggcaggtg
gtcagcgtcgaactgatggaatggcctgatcgctacgtgcagccggtgggccgcgtggtc
gaggtgattggcgatatcgacgatcccggcatggagatcgagattgccgtgcgcaagtat
ggcgtgccgcatcagttctcgcccgctgccgtcaaggaagcacaggggttgcccgatgag
gtgcgtcaggccgacctcgatcatcgcatcgacctgcgcgacattccgctggtcacgatc
gatggcgaggatgcgcgcgacttcgacgatgccgtctattgcgagcaggtcaagatcggc
cgtgcaaagggctggcgtctgatcgtggcgatcgccgacgtgtcgcactacgtgcggccg
ggtacgccgctcgatgccgatgcgctggatcgcgccacgtcggtttacttcccgcgccgc
gtgattccgatgctgccggagaagctgtcgaatggcctctgctcgctgaacccgaacgtc
gaccgtctgtgcatggtttgcgacgcggtgatcacggccaagggcgaactcaagggctac
cagttctatccggcggtgatgcactccgcggcacgcctgacctacaacgaggtctggtcg
gttctgtcgaataccaaggggcccgaggcccacaagcgcgcggagctggtgccgcatctg
cagaacctgtatgagctgttccaggttctgctcaaggctcgccgtgcccgtggcgcgatc
gacttcgacaccaccgaaacctatatcgtctgcaacgcgcagggcaagatcgagcagatc
ttgccgcgcactcgcaacgacgcgcaccgtctgatcgaagagtgcatgttgacggctaac
gtctgcgcggccgacttcctcgagcgattcaagcatccggcgctgtaccggattcacgcg
ggtccgagcgaagagaagctcaagaatctgcgcgagttcctgaagaccgctgggctgtcg
cttggcggtggcgacaagccgcaggcctcggactatgccgaggtcatggacaagatcaag
tcgcgtcccgatgcgccgatgttgcagacgatgctgctgcgttcgatgcagcaggcggtc
tacagcccggacaatatcggccacttcggcttggcctacgaggcgtacgcgcacttcacc
agcccgatccgccgctatccggacttgctcgtgcatcgttcgatcaaggcgatcctcgcg
cacacgaagtatcggccggcctttatccaggggacggagctcaatacgcagatctcgccg
aaagcgcgccggatgcaggccgccgatgccgagaagcgtgccgagaacgttgccgcgcgc
gcgaagcgcgacgagggcgtctgggacgaactggggttgcactgctcggccaacgagcgt
cgtgccgacgaggcatcgcgcgacgtggaggcctggctcaagtgctacttcatgcgcgac
aagctgggcagcgatttcgctggcacgatcagcgcggtgacgtcgttcggcatcttcgtg
cagctcgacgagctgtatgtggaaggccttgtgcacgtgacggaactgggtagtgactat
ttccagtacgacgaggcgcgcaacgaactgcgtggcgagcggactggtatccgctatcgg
ctcaccgatcgcgtgcgcgtgcaggtgtcgcgcgtcgacctcgatgcccgcaagatcgac
ttccgtctggtgcaggagccgtccgccaagacgctgcgcgcccgggccggcgtgcccgag
cagccgcgggtgccggctgcccacgcggtgccggcgcgcaagaagggacgccagcttgcc
gcgttgctcggtggcacttcgaagccggaagaatcgttcgacgaaacgctcgaccgtgtg
atcgaagagcaaccggtgttcgaggcggtcatcacgccgctcaagccgcgcgacgcccat
gtcgggcatgcgccgcatggccgcgggtcggcgaagaaggcgcagtcaggcaagcccgca
aagcgagcggccaagccaaagccggcgcatctgaagaccgaacggcagccgacgaccaag
cgcgcgcccaagcccgccggcaagagcacgcggccggcccgcaagcgctaa
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