KEGG   Cupriavidus metallidurans: Rmet_3126Help
Entry
Rmet_3126         CDS       T00351                                 

Gene name
ddlB
Definition
(GenBank) D-alanine:D-alanine ligase
  KO
K01921  D-alanine-D-alanine ligase [EC:6.3.2.4]
Organism
rme  Cupriavidus metallidurans
Pathway
rme00473  D-Alanine metabolism
rme00550  Peptidoglycan biosynthesis
rme01100  Metabolic pathways
rme01502  Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:rme00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00473 D-Alanine metabolism
    Rmet_3126 (ddlB)
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    Rmet_3126 (ddlB)
 09160 Human Diseases
  09175 Drug resistance: Antimicrobial
   01502 Vancomycin resistance
    Rmet_3126 (ddlB)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:rme01011]
    Rmet_3126 (ddlB)
Enzymes [BR:rme01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.4  D-alanine---D-alanine ligase
     Rmet_3126 (ddlB)
Peptidoglycan biosynthesis and degradation proteins [BR:rme01011]
 Precursor biosynthesis
  Amino acid ligase
   Rmet_3126 (ddlB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Dala_Dala_lig_C Dala_Dala_lig_N ATP-grasp_3 ATPgrasp_ST ATP-grasp RimK GARS_A ATP-grasp_4 CPSase_L_D2 TTL
Motif
Other DBs
NCBI-ProteinID: ABF09998
UniProt: Q1LIM8
LinkDB All DBs
Position
complement(3388200..3389183)
Genome map
AA seq 327 aa AA seqDB search
MSFVAHPNIDPKSLGKVGVLLGGKSAEREISLLSGNGVLAALKSRGVDAHPFDPGLQPIS
ELAAAGFDRVFIALHGRYGEDGTMQGLLEQLGIPYTGSGVLASALAMDKQATKRLWMTHG
LATPRFAMLYANTDFDAVVADLGLPLIVKPAREGSSIGLTKVIAADQMRAAFEKAAGLDA
DVIAETFIDGAELTCPIVGEGPTAEALPVIKIVAPESNYDYQNKYFTDDTQYLCPSTLPD
ALEREVRALAVEAFRVLGCRGWARADVMLTRDGKPYLLEMNTSPGMTGHSLVPMAARANG
ISYEDFVMQVLAAATLDLHPNEHWKPE
NT seq 984 nt NT seq  +upstreamnt  +downstreamnt
atgagcttcgtcgcccatcccaatatcgatccgaagtcgctgggcaaggttggcgtgctg
ctgggtggcaagtccgccgagcgcgagatctcgctgctgtccggtaacggtgtgctggcc
gcgctgaagtcgcgcggcgtcgatgcgcatccgttcgatccgggcctgcagccgatcagc
gaactggctgccgcaggtttcgaccgcgtttttatcgcgctgcacggtcgctacggcgaa
gacggcacgatgcagggcctgctcgagcagcttggcatcccctataccggcagcggcgtg
ctggcgtcggcgctggccatggacaagcaggctaccaaacgcctgtggatgacgcacggc
ctggctacgccgcgcttcgcgatgctctacgcgaataccgatttcgatgccgtggttgcc
gatcttggcctgccgctgatcgtcaagccggcccgtgaagggtcgtcgatcggcctgacc
aaggtgatcgccgcggaccagatgcgcgctgcattcgagaaggccgcagggctcgatgcc
gacgtgatcgccgagactttcatcgatggcgcggagctgacttgcccgatcgtgggcgag
ggtccgacggccgaagcgctcccagttatcaagattgtcgcgccggagtcgaactacgac
tatcaaaataagtattttactgacgatacccaatacctgtgcccctcgacattgcccgac
gcgctggagcgcgaagtgcgcgcgctggccgtggaggccttccgggtgctggggtgtcgc
ggctgggcccgcgcggacgtgatgctgacgcgcgacggcaagccttatctgcttgaaatg
aatacgtcccccggcatgaccggccattcgctcgtgccgatggcggcgcgtgcgaatggc
atcagctatgaggacttcgtcatgcaggtactggcggcagccacgctggacctgcatccg
aatgaacactggaaacccgaataa

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