KEGG   Ralstonia mannitolilytica: TK49_07020Help
Entry
TK49_07020        CDS       T03778                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rmn  Ralstonia mannitolilytica
Pathway
rmn03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rmn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    TK49_07020 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rmn03400]
    TK49_07020 (ligD)
Enzymes [BR:rmn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TK49_07020 (ligD)
DNA repair and recombination proteins [BR:rmn03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     TK49_07020 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AJW44483
LinkDB All DBs
Position
1:complement(1472106..1474727)
Genome map
AA seq 873 aa AA seqDB search
MPRHLADYRRKRDFTLTQEPSGARRKADEQRRRGDDGALHFVIQKHDARRLHYDFRLELD
GTLKSWAVPKGPSLDPHDKRLAVHVEDHPLDYADFEGHIPEGQYGGGDVIVWDRGTWRPH
GDPRKAYREGKLKFELDGEKLHGAWALVRTHLRATGRQPKEQWLLIKEHDDHVRAAADYD
ITRALPGSVISGRHVGEEAPQARAARTPATGAPADTAVRPPAGAVPAALPKTLEPQLATL
VDAPPAHGEWDYEVKFDGYRILARIDGESIRLFSRNGRDWTAKLPRQVRTLPALGLREAW
LDGEVVVMGERGVPDFQSLQNAFETSHAEHIAYYLFDLPFCNGMDLRNVPLRERRALLQR
ILDAAPGDLDREAVLFSGAFNAPPEDLLASACSMSLEGVIGKRADAAYRSGRSPAWIKLK
CGRRQEFVIGGYSAPKGSRSGFGALLLGVYDNAGKLQYAGRVGSGFNETSLRALHHELTS
LATDTPPFVNPPTGSDARDVQWVRPERVAEVAFAEWTREGIVRQAVFQGLRDDKPPRSIV
RETARAPRAGGRKEKPAVSTAQTRPAERKIRAGAERIAGVDVTHPDRVIEKASGTTKADL
ARYYASVADWMLPHLRNRPTSLVRAPDGIEGERFFQKHSAALKLQGITQLDASLDPGHPS
LLAINCAEALVGAVQMGTVELHTWNALADRIEQPDRIVFDIDPDPALPFARVIEATQLTL
AMLDELGLKGFLKTSGGHGMHVVVPLTRRESAGWEALKGFAQAVVQHMAATFPDRFVAKM
GPRNRVGKIFIDYLRNNRGASTVAAYSVRARTGLPVSVPIRHDELQTLQSSAQWTLRTLP
DRLAKLKDDPWADYAGTRQSVTSEMRKRIGLKA
NT seq 2622 nt NT seq  +upstreamnt  +downstreamnt
atgccacgccatctcgccgactaccgccgcaaacgcgatttcaccctcacgcaggagccc
tccggcgcgcgccgcaaggccgacgaacaacgcagacgcggcgacgacggcgcgctgcac
ttcgtcatccagaagcacgacgcgcggcggctgcattacgacttccgcctcgaactcgac
ggcacgctcaagagctgggccgtaccgaagggcccgagcctcgacccgcacgacaagcgc
ctcgcggtgcatgtcgaagaccatccgctcgactacgccgactttgaagggcacatcccc
gaaggccagtacggcggcggcgacgtgatcgtgtgggaccgcggcacgtggcgcccgcac
ggcgatccgcgcaaggcctatcgcgagggcaagctcaagttcgaactggacggtgaaaag
ctgcacggcgcgtgggcgctggtgcgcacgcatctgcgcgccaccggccggcagccgaag
gagcagtggctgctgatcaaggaacatgacgaccacgtgcgcgccgcggccgactacgac
atcacgcgcgcgttgcccggcagcgtcatcagcggcaggcatgtcggcgaagaggcgccg
caggcgcgtgccgccaggacgcccgccaccggagcccctgccgataccgcggtgcggccg
cccgccggcgccgtgccggccgcgctgccgaagacgctggagccgcagctggccacgctg
gtcgatgcgccgcccgcgcacggcgaatgggactacgaggtcaagttcgacggctaccgc
atcctcgcgcgcatcgacggcgagagcatccgcctgttcagccgcaacggacgcgactgg
acggccaagctgccgcgccaggtgcgcacactgcctgcgctgggcctgcgcgaggcatgg
ctcgatggcgaggtcgtggtgatgggcgagcgcggcgtgcccgacttccagtcgctgcag
aacgcgttcgaaacgtcgcacgccgagcacatcgcgtattacctcttcgacctgccgttc
tgcaacggcatggacctgcgcaacgtgcccctgcgcgagcggcgcgcgctgctgcagcgc
atcctggacgcggcgccgggtgacctggaccgcgaggccgtgctgttctccggcgccttc
aacgcgccgccggaagacctgctcgcctcggcatgcagcatgtcgcttgaaggcgtgatc
ggcaagcgcgccgatgcggcgtatcgctcgggccgcagccctgcatggatcaagctcaag
tgcgggcggcggcaggagttcgtgatcggcggctacagcgcacccaagggcagccgcagc
ggcttcggcgcactgctgctcggcgtgtacgacaacgcgggcaagctccagtacgcgggc
cgcgtgggcagcggcttcaacgagacgagcctgcgcgcgctccatcacgaactcaccagc
ctggcgaccgacacgcccccgtttgtgaacccacccaccggctccgacgcgcgcgacgtg
caatgggtcaggcccgagcgcgtggccgaggtcgcctttgccgaatggacgcgcgagggc
atcgtgcggcaggccgtcttccagggcctgcgtgacgacaagccgcctcgcagcatcgtt
cgcgaaaccgccagagcgccccgtgcaggcggccgcaaggagaagcccgccgtgagcacc
gcccagacgcgccccgccgaacgcaagatccgcgcgggcgcggagcgcatcgcgggcgtc
gacgtgacgcacccggaccgcgtcatcgaaaaggccagcggcaccaccaaggccgatctg
gcgcgctactacgcgagcgtcgccgactggatgctgccgcacctgcgcaaccggcccacg
tcgctcgtccgcgcgcccgacggcatcgaaggcgaacgcttcttccagaagcattcggcg
gcgctcaagctgcagggcatcacgcagctcgatgcgtcgctggacccggggcacccctcg
ctgctggcgatcaactgcgcggaggcgctggtcggcgcggtgcagatgggcacggtggag
ctgcacacctggaacgcactcgccgatcgcatcgaacagccggaccgcatcgtcttcgac
atcgacccggaccccgccctgccgtttgcacgcgtcatcgaggccacgcagctgacgctg
gcgatgctcgacgaactcgggctgaagggcttcctgaagaccagcggcggccatggcatg
cacgtggtggtgccgctcacgcgccgggagtcggccggctgggaagcgctgaaaggcttt
gcgcaggccgtggtccagcacatggccgcgacctttccggaccgcttcgtcgccaagatg
gggccgcggaaccgcgtggggaagatcttcatcgattacctgcgcaacaaccgtggggcg
agcacggtcgcggcgtattccgtgcgcgcacgcacggggctgccggtgtcggtgccgatc
cggcatgacgaactgcagacgctgcagtcttctgcgcagtggacgctgcgtacgctgccc
gaccgcctggccaagctcaaggacgacccttgggccgattacgccggcacgcgccagtcc
gtcacgtcggagatgcgcaagcgcatcggcctcaaggcctga

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