Rhodothermus marinus DSM 4252: Rmar_2856
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Entry
Rmar_2856 CDS
T01119
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rmr
Rhodothermus marinus DSM 4252
Pathway
rmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rmar_2856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmr03019
]
Rmar_2856
03400 DNA repair and recombination proteins [BR:
rmr03400
]
Rmar_2856
Enzymes [BR:
rmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rmar_2856
Messenger RNA biogenesis [BR:
rmr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rmar_2856
DNA repair and recombination proteins [BR:
rmr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Rmar_2856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF559
MTES_1575
Acyl-CoA_dh_C
AAA_22
DUF2726
Motif
Other DBs
NCBI-ProteinID:
ACY49723
UniProt:
D0MKQ9
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All DBs
Position
pRMAR01:complement(61891..65622)
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AA seq
1243 aa
AA seq
DB search
MDRYWYSAAARLGLWDTLPEAQQGLVNNLYRRLRFYAHAVLEGYEAFAFDKTESESLSSL
LAVIDKLTIRGCPTLVDLDLETALLEGPCRQFVDAVPIEDGPVVGWKFRRFLLPVQFSDL
IRATVELLELPFSSNGKDGTDDLAYPVITPELEALSSEEEHLFIEQFASVFGSHLLRKLR
RQVPLQDLVPYELEEPFVRQRVDFALQIGRLRYVFEIDGRQHLEPGQRRLDDQRDQLLKN
AGWQVIRIPVEVVRQGRGSQLQTLHDRLREAQLEGLEQIGRTSVLDLVASSDLYRAALYG
WIYPLAVHRCLRGLAFLYRFGYLDAGRPQRVLVIEEDIPVVASAFRILHTYWDHLRALAP
EVPPPPTLEVDVIGCDEIEILAPVEGTRRVTAPSGSYDLVLDHSFWLYDGSEGPLEKELQ
PLPPGRYVRLRRAFGLREERSLTWSAALHYDLGDLERALIAEAEGRPAEMPERKVAALRF
FLQQIFRKRDFWEGQLRVIARLLQGRPTVVLLPTGGGKSLTYQYSGMLLPGMTIVVDPLI
SLMIDQVDNLRGFAIDMVASISSIIDTEARERIIAQMGAGKLAYVFISPERLQSDDFRQK
LQDVAARLPISLAVVDEAHCVSEWGHDFRPSYLHMTHNLQKFCASAASRPTLVALTGTAS
FAVLTDIQAELGITDESAIVLPRSFDRKEIRFHVERVPREAKMHALKRFRSQLPYLLRVN
PQRFFDLSGAETNCGIVFCPHVNGELGVWEVALELGHGKCYAGKQPRSFNEQRHGKWRDF
KLKVQKDFKHNRIQEIVATKSFGMGIDKPNIRYTIHICIPHSVEAFYQEAGRAGRNGKPG
YAISAILYSDENWVEAMGIFNEADHRKAQKKIENIPWNSRGDLLIQLWLLYNTYRGRDDE
YQRALDFWKRYVRPELKELPVGATRLLEIPFTQSRRVDDEEEETNRGALEKSIFRMVILR
IVEDYTIDWNQSIFQLRVRNAAPIEIKQSLRNYLGRYKLPATADQMVQPIPEDDQEKALE
AALEVLIDFVYGEIAAKRKQALRTMAELCRNFRSDRDFREAILAYLQESEFSAELRTWIG
RGFDEIGLEKIRDLLGKLSSLDEIKRLVGTTRRMLDEDPGNVPLRYLSAVARALSRVESE
ESVLEEVVSLTLQILRLKDRLRDPDEILAALLGDLATARPELLARAADRVLRLFGTPALA
RRLLQGPAGSDAVVRNHAAVLLMAESLRTIRESAFYQTLVNAV
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atggaccgctactggtattcggcagcggcgcgtctcgggttgtgggacactctgcccgaa
gcgcaacaggggctggtcaataacctctacagacgacttcgattctatgcccacgcggtc
ctggagggctacgaagcatttgctttcgacaagacggagtccgagtctctgagttcgctt
ctggccgttatcgacaaactgacgattcgagggtgcccgacgctggttgatctcgacctg
gagacggccttactcgaaggcccctgccgccaattcgtcgatgcagtcccgattgaagat
ggtccggttgtgggatggaaattcagacggttcctgttgcccgtgcagttttcggatctg
atccgggccacggtcgaattgctcgaattaccgttcagctccaacggtaaggatggaacg
gacgacctggcatatccggtgataacgccagagctggaggcattgagcagcgaggaggag
catctgtttatcgagcagtttgcgagcgtttttgggtcgcacctgttgcgtaaactgcgc
aggcaggttccgttgcaggatctcgtgccttatgagcttgaggagcccttcgttcgccag
cgcgtcgattttgccctgcagatcggacggttgcgatacgttttcgaaatcgatggcaga
caacatctggagccggggcagcgccgtctggatgatcagcgagatcagttgctgaaaaac
gccggctggcaggtgattcgtattccggtcgaagtcgtgcgtcaggggaggggttctcaa
ctgcagacgctacatgacaggctgcgcgaagcgcagctcgaagggctggagcagatcggc
cggacgagtgtgctggacctggtggccagctcggatctttaccgcgccgcgctctacggc
tggatttatccgctggcggtgcatcgctgcctgcgcgggcttgctttcctgtaccggttc
ggttatctggatgcaggcaggccgcaacgtgtgctggtcattgaagaggatattccggtg
gtggccagtgcgtttcgcattctgcatacctactgggaccatctccgagcgctggctccg
gaggtgccgcctccaccgacgcttgaagttgacgtgatcggatgcgacgagattgaaatt
ctggcgcccgttgaaggcacgcggcgcgttacggctccttcgggctcatacgacctggtg
ctggaccacagtttctggctgtatgacgggtcagagggaccgctggaaaaagaattacag
ccgctgcctcccgggcgttatgtgcgtctgcgtcgggctttcggcctgcgcgaagagcgg
tctctgacctggtcggcggccctgcactacgatctgggcgatcttgaacgggccctgatt
gccgaggccgaggggcgccctgcagaaatgcccgaacgtaaagtggctgccttgcggttt
ttcctgcagcagattttccggaagcgagatttctgggaggggcagcttcgcgtcattgcc
cggcttctccaggggcgtcccacggtggttctgctgccgacaggcggcggtaaatcgctg
acctatcagtacagcgggatgctgctgccgggcatgaccatcgtcgtcgatcccctcatt
tctctgatgatcgaccaggtcgataatctcagaggatttgccatagatatggtggcctct
atctcttcaatcatcgacacagaagcgcgtgagcgcattattgcacagatgggggccggt
aagctcgcgtatgttttcatctcgccggagcgccttcagagcgacgatttccggcagaag
ttgcaggatgtggccgctcgacttcccatctcgctcgcggttgtcgatgaagcacactgc
gtttccgaatggggccacgactttcgtccgtcttatctgcacatgacgcacaaccttcag
aaattctgcgcttcagctgcttccagaccaacccttgttgccctgacgggtaccgcttcg
tttgccgtgctgaccgatattcaggccgaactgggaatcaccgacgaaagtgccattgtg
cttcccaggtcgttcgatcgtaaggaaatccgctttcacgtggagcgggtgcctcgcgaa
gcaaaaatgcacgctcttaagcgctttcgcagtcagcttccatatctgctccgggtcaat
cctcaacgcttctttgatctcagtggcgccgagacgaattgcggtattgtgttctgtcct
cacgtaaatggagaactcggtgtctgggaagtggcgcttgagcttggccacggaaagtgc
tacgccggcaaacaacccagaagctttaacgagcaacggcacggtaaatggcgtgacttc
aagttgaaggttcagaaggatttcaagcacaacagaatccaggagatcgtcgcaaccaag
tcgttcggaatgggcattgacaaacccaacattcgctacaccatacacatctgcattcca
cattcggtcgaggccttctatcaggaagcaggtcgtgcgggccgcaacggaaagccgggc
tatgcaatttcggccattctgtacagcgacgagaactgggtggaggcaatggggatcttc
aacgaagccgatcaccggaaggcccagaaaaagatcgaaaacattccgtggaatagccgt
ggcgatttgctcattcagctgtggctgctgtataacacctaccgggggcgcgacgacgag
tatcagcgagcgcttgacttctggaagaggtatgtgcgcccggagctgaaggagctaccc
gtaggcgccacgcggctgttggagattccatttacccaatcccgaagggttgacgacgag
gaggaagagactaacaggggggcgcttgagaagtccatcttccggatggttattctgagg
atcgtggaagactacacgattgactggaatcagagcattttccagttgcgcgtgcgcaat
gccgctccgatagagataaagcaatcgcttcgcaactatctggggcgctataaactgccg
gccacggccgatcagatggttcaaccgattccggaggatgaccaggaaaaggccctggag
gcagcactcgaagtgttgatcgattttgtctatggtgaaatagccgccaagcggaaacag
gctctgcgcacgatggcggagctctgtcgcaacttcagatccgacagggatttcagagag
gccattctcgcctacctgcaggagtcggaattttccgcggagttgcgcacctggatcggg
cgcggttttgatgagatcggccttgaaaagattcgcgatttgctcggaaaactctcttcg
ctggacgagatcaaaaggcttgtgggtacgactcgacgtatgctggatgaggatccgggc
aacgtgccgcttcgctatctttccgcagtggcccgggcgttgagtcgggtggaaagcgag
gaaagcgtgctggaggaggtcgtgtcgctgacgcttcagatccttcggctgaaggatcga
ctgagagatccagacgaaatactcgcggcactgctgggagatcttgcgaccgctcgtccc
gaactgctggccagggccgccgacagggtgcttcggctgttcgggactcctgccctggcc
cgcagacttctgcagggacctgcagggtctgatgcggttgtgcgtaaccacgcggccgta
ttgctcatggcagaatccctgcgtacgatcagagaatccgcgttttatcagacccttgtt
aatgcagtatga
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integrated database retrieval system
