Rattus norvegicus (rat): 108348065
Entry
108348065 CDS
T01003
Definition
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno05034
Alcoholism
rno05165
Human papillomavirus infection
rno05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09160 Human Diseases
09161 Cancers: Overview
05203 Viral carcinogenesis
108348065
09165 Substance dependence
05034 Alcoholism
108348065
09172 Infectious diseases: Viral
05165 Human papillomavirus infection
108348065
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rno01009
]
108348065
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
108348065
04131 Membrane trafficking [BR:
rno04131
]
108348065
03036 Chromosome and associated proteins [BR:
rno03036
]
108348065
Enzymes [BR:
rno01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
108348065
Protein phosphatases and associated proteins [BR:
rno01009
]
Protein Ser/ Thr phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108348065
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic Type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
108348065
Membrane trafficking [BR:
rno04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
108348065
Chromosome and associated proteins [BR:
rno03036
]
Eukaryotic Type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
108348065
SSDB
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Other DBs
NCBI-GeneID:
108348065
NCBI-ProteinID:
XP_003752058
RGD:
11442569
Ensembl:
ENSRNOG00000047281
UniProt:
A0A0G2QC41
LinkDB
Position
Xq12
AA seq
1152 aa
MTSTGQDSSTRQRKSRHNPQSPLQDSSATLKRGGKKGAVPHSSPNLAEVKKKGKMKKLSQ
PAEEDLIVGLQGLDLNSETRVPVGTGLVFDEQLNDFHCLWDDSFPENPERLHAIKEQLIL
EGLLGRCVSFQARFAEKEELMLVHSLEYIDLMETTQYMNEGELRVLAGTYDSVYLHPNSY
SCACLATGSVLRLVDAVMGAEIRNGMAVIRPPGHHAQRSLMDGYCMFNHLAVAARYAQKK
HRIQRILIVDWDVHHGQGTQFIFDQDPSVLYFSIHRYEHGRFWPHLKASNWSTTGFGQGQ
GYTINVPWNQVGMRDADYIAAFLHILLPVAFEFQPQLVLVAAGFDALHGDPKGEMSATPA
GFAHLTHFLMGLAGGKLILSLEGGYNLHALAKGVSGSLHTLLGDPCPMLESPVAPCASAQ
TSISCTLEALEPFWEVLERSVEPQDEDEVEGDMLEDEEEEGHWEATALPMDTWPLLQNRT
GLVYDERMMSHCNLWDNHHPETPQRILRIMCHLEEVGLAARCLILPARPALDSELLTCHS
AEYVERLRATEKMKTRDLHREGANFESIYICPSTFACAQLATGAACRLVEAVLSGEVLNG
IAIVRPPGHHAEPDAACGFCFFNSVAVAARHAQVIAGRALRILIVDWDVHHGNGTQHIFE
EDPSVLYVSLHRYDRGTFFPMGDEGASSQVGRAAGTGFTVNVPWNGPRMGDADYLATWHR
LVLPIAYEFNPELVLISAGFDAAQGDPLGGCQVTPEGYAHLTHLLMGLAGGRIILILEGG
YNLTSISESMAACTHSLLGDPPPQLTSLRPPQSGALASISEVIQVHRKYWRSLRLMKMED
KEERSSSRLVIKKLPQSASPVSAKGMTTPKGKVLEAGMRKPTAALPTKESTLGQAKAKTA
KALLAQGQSSEQAAKGTTLDLATSKDTVGGATTDQCASVAATENSANQTTSGEEASGETE
SFGTSPSSNASKQTTGASPLHGAAAQQSPELGLSSTLELSSEAQEVQESEEGLLGEAAGG
QDMNSLMLTQGFGDFNTQDVFYAVTPLSWCPHLMAVCPIPAAGLDVSQPCKTCGSVQENW
VCLTCYQVYCSRYVNAHMVCHHEASEHPLVLSCVDLSTWCYLCQAYVHHEDLQDVKNAAH
QNKFGEGMPHLQ
NT seq
3459 nt
+upstream
nt +downstream
nt
atgacctccaccggccaagattcttctaccaggcagcgaaagagtaggcacaatccccaa
tcgccccttcaggactccagcgccaccttgaagcgtggtgggaagaagggtgctgtaccc
cactccagccccaatctagcggaggtaaagaagaaaggcaaaatgaagaagctcagccaa
ccagctgaagaagacctaatcgttgggcttcaagggctggatctgaactctgagacaaga
gtaccagttggtactggattggtatttgatgaacagctaaatgacttccactgcctttgg
gatgacagcttccctgaaaaccctgagcggctccatgccatcaaagagcagctgatcctg
gagggcctcctgggccgctgtgtgtcctttcaggcccggttcgccgagaaggaggaactg
atgttggttcacagcctggaatacattgatctgatggagacaacccagtacatgaatgaa
ggagaacttcgagttcttgcaggcacctatgattccgtttatctgcatccgaactcatat
tcatgtgcctgcctagctacaggctctgtcctcaggctggtagatgcagttatgggggct
gagattcggaatggcatggccgtcatcaggcctcctggacaccatgctcagcgcagtctt
atggatgggtattgcatgttcaaccacctggctgtggctgcccgctatgcacaaaagaag
caccgcattcagaggattctcatcgtggactgggatgtgcaccatggtcaaggaacacag
ttcatcttcgaccaggaccccagtgtactctatttctccatccaccgctatgagcatggt
cggttctggccccaccttaaggcttctaactggtccactacaggctttggccaaggccaa
ggatataccatcaatgtaccttggaaccaagtggggatgcgggatgccgactacattgct
gctttcctgcacatcctgctgccagttgcctttgagtttcagcctcaactggtcctggtg
gccgctggatttgatgccctccatggagaccccaagggagagatgtctgccactccagca
ggatttgcccacctgacccatttccttatgggtttggcaggaggcaagttgattctgtct
ctggagggtggctataacctccatgccttggctaagggcgtcagtggctcactccacacc
cttcttggagatccttgccccatgttggagtcccctgttgcaccttgtgcaagcgcccag
acttctatctcctgcactctagaagcccttgaacccttctgggaagtccttgagagatca
gttgagccccaggatgaagatgaagtggaaggagacatgctagaggatgaagaggaggaa
ggccactgggaggccactgctctaccaatggatacatggccactgctccagaaccgcact
gggctggtctatgacgaaagaatgatgagtcactgcaacctgtgggacaatcatcatcct
gagacacctcagcgcatcctacgcatcatgtgtcacctggaggaggtgggccttgcagca
cgctgtctcatcctacctgctcggcctgccctggattctgaactccttacgtgccacagt
gcggagtatgtggaacgtcttcgggccacagaaaagatgaaaactcgggatctgcaccgt
gaaggtgccaactttgagtccatctacatctgccccagcacctttgcctgcgcacagctt
gccacaggcgctgcctgccgcctggtggaagccgtgctttcaggagaggttttgaatggc
attgcaatagtgcgccctccaggacaccatgcggagccagatgctgcttgtggtttctgc
tttttcaattctgtagctgtagctgctcgccatgcccaagtcattgctggacgtgccctg
aggatcctaatcgtggattgggatgttcaccatgggaatggaactcagcacatatttgag
gaagaccccagtgtattatacgtgtccctgcaccggtatgaccgtggtactttcttcccc
atgggggatgagggtgccagtagccaagtagggcgagctgcaggtacaggcttcactgtc
aatgtgccctggaatgggccccgcatgggggatgctgattacctggctacgtggcatcgg
ctggtacttcccatcgcctatgagtttaacccagagctggtgctgatatcagctggcttt
gatgctgcccaaggggacccactgggaggctgccaagtgacacctgagggttatgcccac
ctcacccacctgctgatgggccttgctggtggccgtattattcttattctggagggtggc
tacaacttgacatccatctctgaatctatggctgcctgcacccattccctccttggagac
ccaccaccccagcttacttcgctccgacctccccagtcaggagccctggcttcaatcagt
gaggtcatccaagtgcatcgcaaatactggcgcagtttgcggttaatgaagatggaagac
aaggaagaacgctctagttctaggcttgtcatcaagaagctgccccagtcagctagtcct
gtgtccgctaagggaatgaccacaccaaaaggaaaggttctcgaagcaggcatgaggaag
cccacagcggcattacctacaaaagagtcgactctaggccaggctaaagcaaagacagct
aaggcattgctcgcccagggccagtcctcagaacaagctgctaagggaactacactggat
ctggccacctcaaaggacactgtgggaggtgccacaactgaccagtgtgcttcagtagca
gctacagaaaactcagctaaccagaccacgtcaggggaggaggcttcaggagaaactgag
tcattcggaacttctccatcctcaaatgccagcaagcagaccacaggagcttcacctctg
cacggagccgcagcccagcagtcccccgagcttgggctttccagcactttggagctaagc
agtgaagctcaggaagtccaagaatccgaggagggcctactaggagaagcagctggaggt
caggacatgaacagcttgatgctgacacaaggatttggggactttaatacccaggatgta
ttttatgccgtgactccactatcctggtgtccccacttgatggcggtgtgccccattcct
gcagcaggcctagatgtgtcccaaccttgtaagacctgtggatcggttcaggagaactgg
gtgtgtctgacttgttatcaggtgtactgcagtcgctatgtcaatgcccatatggtctgc
caccatgaagcctctgaacaccctctggtcctcagctgtgttgacctgtctacctggtgt
tacctctgtcaggcctatgtccaccacgaggatctccaagatgtgaagaacgctgcccac
cagaacaagtttggggagggcatgccgcacttgcagtaa
DBGET
integrated database retrieval system
