Rattus norvegicus (rat): 314336
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Entry
314336 CDS
T01003
Symbol
Ddx41
Name
(RefSeq) probable ATP-dependent RNA helicase DDX41
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
3.6.4.13
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
314336 (Ddx41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rno03041
]
314336 (Ddx41)
Spliceosome [BR:
rno03041
]
Complex C
Other components
Complex C specific factors
314336 (Ddx41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
zf-CCHC
ResIII
UTP25
ERCC3_RAD25_C
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
314336
NCBI-ProteinID:
NP_001101516
RGD:
1311758
Ensembl:
ENSRNOG00000012771
UniProt:
A6KAR2
F7EL80
LinkDB
All DBs
Position
17:9108030..9113562
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AA seq
622 aa
AA seq
DB search
MEESEPERKRARTNEATAGGSRSEDEDEDDEDYVPYVPLRQRRQLLLQKLLQRRRKGAAE
EEQQDSGSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAEARKESAKEKQLKEEEKILESV
AEGRALMSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPI
KSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVI
MFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGG
MSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRT
IFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAK
MVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRE
GKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKAC
DESVLMDLKALLLEAKQKVPPVLQVLHCGDESMLDIGGERGCAFCGGLGHRITDCPKLEA
MQTKQVSNIGRKDYLAHSSMDF
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggaggagtcggaacccgagcggaagcgggctcgcacgaacgaggcgactgcgggtggg
agccgctccgaggacgaagatgaggacgacgaggactacgtgccctacgtgccgttgcgg
cagcgccggcagcttctgctccagaagctgctgcagcgaagacgcaagggagctgcagag
gaagagcagcaggacagtggcagtgagccccgaggagatgaggacgacatcccgctgggt
cctcagtccaatgtcagcctcctggatcagcaccagcacctcaaagagaaggctgaagca
cgcaaggagtccgccaaggaaaagcaactgaaggaagaagaaaagattctggagagtgtg
gctgaaggccgagccttgatgtcagtgaaggaaatggccaaaggcattacctacgacgat
ccaatcaaaactagttggacacccccgcgctatgtcctgagcatgtcagaagagcggcac
gagcgtgttcggaagaagtaccacatcctggtggagggagacggtatcccgccacccatc
aagagcttcaaggaaatgaagctccctgcagctatccttcgaggcctgaagaaaaagggc
atcctccacccaacacccattcagatccagggcatccctaccattctgtctggtcgggac
atgattggcatcgccttcacggggtcaggcaagactctggtattcacactgcccgtcatc
atgttctgcctggaacaagagaagcggttgcctttctccaagcgggaagggccttatgga
cttatcatctgcccctcacgagagctggctcggcagacccatggcatcctggagtattac
tgccgtctgctgcaggaagacagctcccctctcctgcgctgcgcactctgcatcgggggc
atgtcggtgaaggagcagatggagaccatccgacatggtgtgcacatgatggtagccaca
ccgggacgcctcatggatttgctgcagaagaaaatggtcagcctagacatctgccgctac
ctggccctggatgaggctgaccgcatgatcgacatgggctttgagggtgacatccgtacc
atcttctcctacttcaagggccagcggcagactctgctcttcagtgccaccatgccgaag
aagattcagaacttcgccaagagcgccctggtcaagcctgtcaccatcaatgttggtcgt
gctggagcagccagccttgacgtcatccaggaggtggaatatgtgaaggaggaagccaag
atggtgtacctgcttgagtgcttgcagaagacgcccccacctgtactcatctttgcagag
aagaaagcagatgtggatgccattcacgaatacctcctgctcaaaggagttgaggctgtg
gccattcatgggggcaaagaccaggaagagcggaccaaggccattgaggcattccgggaa
ggcaagaaggacgtcttagtggccacggacgtggcctctaaaggcctagactttcctgcc
atccagcacgtcatcaactatgacatgcctgaagaaatcgagaactatgtgcaccgaatc
ggccgcactgggcgctcaggaaacacaggcattgccaccacctttatcaacaaggcctgc
gatgagtcagtgctcatggacctcaaagccttgctgctggaggccaagcagaaggtacca
cctgttctgcaagtgctgcactgtggggatgagtccatgctggacatcggaggagaacgg
ggctgcgccttctgtggaggccttggtcatcgaatcactgactgccccaaactcgaagct
atgcagaccaagcaggtcagcaacattggccgcaaggactacctggcgcacagctccatg
gacttctga
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