Rattus norvegicus (rat): 315820
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Entry
315820 CDS
T01003
Symbol
Myo5c
Name
(RefSeq) unconventional myosin-Vc
KO
K10357
myosin V
Organism
rno
Rattus norvegicus (rat)
Pathway
rno04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
315820 (Myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
315820 (Myo5c)
04131 Membrane trafficking [BR:
rno04131
]
315820 (Myo5c)
03029 Mitochondrial biogenesis [BR:
rno03029
]
315820 (Myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
rno04812
]
315820 (Myo5c)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
315820 (Myo5c)
mRNA cycle factors
P-body specific factors
315820 (Myo5c)
Membrane trafficking [BR:
rno04131
]
Others
Actin-binding proteins
Myosins
315820 (Myo5c)
Mitochondrial biogenesis [BR:
rno03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
315820 (Myo5c)
Cytoskeleton proteins [BR:
rno04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
315820 (Myo5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
AAA_22
nSTAND3
AAA_16
AAA_13
Motif
Other DBs
NCBI-GeneID:
315820
NCBI-ProteinID:
NP_001101637
RGD:
1309994
Ensembl:
ENSRNOG00000008356
LinkDB
All DBs
Position
8:84870031..84946996
Genome browser
AA seq
1742 aa
AA seq
DB search
MAVAELYAQYNRVWIPDPEEVWKSAEIAKDYRVGDQVLRLLLEDGTELDYPVDPGSLPPL
RNPDILVGENDLTALSYLHEPAVLHNLRIRFAESKLIYTYSGIILVAMNPYKQLPIYGDA
IIHAYSGQNMGDMDPHIFAVAEEAYKQMARNNRNQSIIVSGESGAGKTVSARYAMRYFAT
VSKSSSNAHVEEKVLASNPITEAVGNAKTTRNDNSSRFGKYTEISFDERNQIIGANMRTY
LLEKSRVVFQSENERNYHIFYQLCASAQQSEFKHLKLGSAEEFNYTRMGGNTVIEGVDDR
ADMAETQKTFTLLGFKKDFQMDVFKILAAILHLGNVQVTTVGNERSAVSEDDSHLKVFCE
LLGLETIKVAQWLCNRKIVTSSETVVKPMTRPQAINARDALAKKIYAHLFDFIVEQINQA
LHFSGKQHTFIGVLDIYGFETFDVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKEDI
PWTLIDFYDNQPVIDLIEAKMGILELLDEECLLPHGTDENWLQKLYNNFVNKNSLFEKPR
MSNSSFIIQHFADKVEYQCEGFLEKNRDTVYDMLVEVLRASKFHLCAAFFQESPVPSSPF
GAMITVKSAKQVIKPNTKHFRTTVGNKFRSSLFLLMETLNATTPHYVRCIKPNDEKLPFE
FDSKRIVQQLRACGVLETIRISAQSYPSRWTYLEFYSRYGVLMTQQELSLSDKKEVCKVV
LHRLIQDSNQYQFGRTKIFFRAGQVAYLEKLRLDKLRQGCIVIQKHVRGWLQRKKFLRER
RAALTIQQYFRGQQTVRKAITATALKEAWAAIILQKHCRGYLVRNLYQLIRVATITIQAH
TRGFLARRRYRKLLQEHKAVILQKYARAWLARRRFQNIRRFVLNIQLTYRVQRLQKKLED
QNRENHGLVEKLTSLAALRVGDLEKVQRLEAELEKAATHRHSYEEKGRRYRDSMEERLSK
LQKHNAELESQRERAEQSLQERTEELKEKMDQLTRQLFDDVQKEEQQRLLLEKSFELKTQ
AYEKEIESLREEIKALKDERTQLHHQLEEGRVTSDSLKGEVARLSKQAKTISEFEKEIEL
LQAQKIDVEKHVQSQKREMRERMSEVTKQLLESYDIEDVRSRLSVEDLEHLNEDGELWFA
YEGLKKATRVLESHFQSQKDCYEKEIEGLNFKVVHLSQEINHLQKLFREETDINESIRHE
VTRLTSENMMIPDFKQQISELERQKQDLESRLKEQAEKMEGKQEEPFSHLNRGLEEEGRQ
GKAVEAQSETHPEGKERLVGKIQEPQEAIKFPKKQAEAEEEVESILRQEASRLSLENRDL
EEELDMKDRMIRKLQDQVKTLTRTIEKANSVPLPSGSREYLGMLEYKKEDETKLIQNLIL
DLKPRGVVVNMIPGLPAHILFMCVRYADSLNDANMLKSLMNSAINGIKHVVKEHFEDLEM
LSFWLSNTCHFLNCLKQYSGEEEFMKCNSPQQNKNCLNNFDLTEYRQILSDVAIRIYHQF
ILVMENNLQPIIVPGMLEYESLQGISGLKPTGFRKRSSSIDDTDAYTMTSILQQLSYFYS
TMCQNGLDPEIVRQAVKQLFYLIGAVTLNSLLLRKDMCSCRKGMQIRCNISFLEEWLKDK
NLQNSLAKETLEPLSQAAWLLQVKKTTDSDAKEISQCCTSLSAVQIIKILNSYTPIDDFE
KRVNPSFVRKVQALLNNRGDSSQLMLDTKYLFQVTFPFTASPHALEMTQIPSSFKLGFLR
RL
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggccgagctctacgcgcagtacaacagggtttggatcccagatcctgaagaa
gtttggaagtctgctgaaattgcgaaggactacagagtgggtgaccaagtcctccgactc
ttgcttgaggatggcacggaactggattaccctgtggacccagggtcactgcctccgctt
cggaacccagacatcctggtgggtgagaatgatctcacagccctcagctacctccatgag
cccgcggtgctgcacaacctcaggatccgcttcgcagagtccaaactcatctacacctac
agcggaatcattttggtggctatgaatccttacaaacagctgccaatatatggggatgcc
atcatccacgcctacagcggacagaacatgggcgacatggacccacacatctttgcggtt
gcagaggaggcctacaagcagatggccaggaacaataggaatcagtccataatcgtgagt
ggggaatctggagccgggaagactgtctctgcaagatacgccatgaggtactttgccacc
gtcagcaagtccagcagtaacgcccatgtggaggaaaaagtcctggcatccaatcccatc
actgaggctgttggaaatgccaagaccactcgcaatgacaacagcagtcggtttgggaag
tacacggaaatcagctttgatgagagaaaccagatcatcggcgccaatatgagaacctac
ctcctggagaagtccagagttgtctttcagtcagaaaatgaacggaattaccacatcttc
taccagctttgtgcatccgcacagcagtcagaatttaaacaccttaaactggggagtgca
gaagagttcaactacacaagaatgggtgggaacactgtcattgaaggcgtcgatgacaga
gctgacatggcggagacccagaagaccttcacattgctgggattcaagaaagattttcag
atggatgtttttaagatcctagctgccatcctgcatctgggcaatgtgcaggtcaccaca
gtgggcaacgagaggtctgcagtcagtgaggatgacagtcacctgaaggtgttctgtgag
ctcttgggcctggagactatcaaagtggctcagtggctatgcaaccgaaaaatagtgacc
tcctcagaaactgtggtgaagcccatgaccaggcctcaggccatcaatgccagggacgcg
ctggccaaaaagatctacgctcacctgttcgacttcattgtagagcaaatcaatcaggca
ttgcacttctcaggcaagcagcacacttttattggtgttttggacatttatggttttgag
acgtttgatgtaaacagctttgaacagttctgcatcaattacgctaacgaaaagctgcag
cagcagtttaacctgcacgtctttaaacttgagcaagaggaatacatgaaggaggacatc
ccttggactctgatagacttctatgacaatcaacctgtgattgacctgatcgaagccaaa
atgggcattttggagttgctggatgaagaatgcttgttgcctcatggaactgatgaaaac
tggcttcaaaagctgtataacaattttgtcaacaagaactctttattcgagaagcctaga
atgtcaaactcatccttcatcatccaacattttgctgacaaggtggagtaccagtgtgag
gggttcctggagaagaacagagacactgtctacgacatgctggttgaagtcctcagagca
agcaagtttcatctctgtgccgccttttttcaagaaagccctgttccgtcttctcccttt
ggggcaatgatcacagtcaaatctgcaaagcaggtcatcaagccgaacaccaagcacttc
cggaccacggttgggaacaagttccgcagctccctgttcttgctcatggaaaccctcaat
gccaccacaccccactacgtccggtgcatcaagccaaatgatgagaagctgccctttgag
tttgactctaaacggattgtccagcagctgcgagcctgtggtgttttagaaacgattcga
ataagtgcccagagctacccttccaggtggacatacctcgagttctacagtcgctacggt
gtcctcatgacccagcaggagctgtccctcagtgataagaaggaggtttgcaaagtggtt
ttgcacaggctcatccaggattctaaccagtaccagtttggcagaaccaagattttcttc
agagcaggacaagtggcttatttagagaaactccgcttggataaactgaggcagggctgt
attgtgatccaaaagcatgtgcgtggctggctgcagaggaagaagttcctccgagagaga
cgagctgccctgacaatccagcagtacttccggggccagcagacagtgaggaaggccatc
actgccactgccttgaaggaggcctgggcagccatcatcctccagaagcattgccgaggc
tacctggtccgtaacctgtaccagctgatccgtgtggccaccatcaccatccaggcacac
accaggggcttcctggccaggaggcggtaccggaagttgctgcaggagcacaaggcagtg
atccttcagaagtatgcgagggcatggctggcccggcgcagattccagaacatccgcagg
ttcgtgctcaacattcagctgacttacagggtccagcgcttgcagaagaagctggaggat
cagaacagagagaaccacgggctggtggagaagctgacaagcctggccgctctgcgggtt
ggtgatctggaaaaggttcagaggctggaggcagagctggaaaaagcagcgacccacagg
cacagctatgaggagaagggccggagatacagggactcgatggaggagagattgtcgaag
ctgcagaaacacaatgcagagctggagtcgcagagagagcgagcagagcagagtctacaa
gagaggactgaggagctgaaagaaaaaatggaccagctcaccaggcagctgtttgatgac
gtacagaaagaagaacagcagagactacttcttgaaaaaagttttgagctgaaaacacaa
gcttatgagaaagagatagagtctctgagagaagaaattaaagccctcaaggatgagagg
acgcagctgcaccaccagctggaggagggacgggtcacctctgacagcctgaagggggag
gtggcccgtctaagcaagcaggcaaagaccatctctgagtttgagaaggagatagaactg
ctgcaggcacagaagatagatgtggaaaaacatgtgcagtcacagaagcgggagatgaga
gaacggatgtcagaggtcaccaagcaacttttggagagctatgacattgaagacgttaga
agcaggctctccgtggaagatctggaacatttaaatgaagatggagaactttggtttgcc
tacgaaggactaaagaaagcaactcgcgttctggagagccatttccagtctcagaaggat
tgctatgaaaaagagattgaaggtctgaacttcaaagtcgtgcatctgagccaagaaatc
aaccacctgcagaagctgttcagagaagagacagacatcaatgaaagtattcgtcatgaa
gtcaccaggctgacatcagaaaacatgatgatcccagactttaagcagcagatttcagag
ctggagaggcagaagcaggatctcgaatcccgcctgaaggagcaggcggagaagatggaa
ggaaagcaggaagaaccattcagccacctgaaccgaggcctagaagaggagggaaggcag
ggcaaggccgtggaagcacagagcgagacgcatccggaagggaaggagaggctggtgggt
aagatccaagaaccacaggaggccatcaagttcccaaagaagcaagcagaagctgaggag
gaagtcgagagtattctccgacaagaggcgtctcggctgtctttggaaaacagggatctt
gaggaagagttagacatgaaggacaggatgattaggaagctacaggatcaagtcaagact
ctgaccaggacgattgaaaaagccaacagtgtgcccctgccctcgggatccagggagtac
ctgggaatgctggagtacaagaaagaagacgagaccaagctcattcaaaacctcattctt
gacctgaagccccgaggcgtggtggtgaacatgatccctgggctgccagctcacatcctg
ttcatgtgtgtgcggtatgcagactccctgaacgatgccaacatgctcaaatccctcatg
aacagtgctattaacggcatcaagcatgtggttaaggaacactttgaagatttggagatg
ctgtccttctggctttccaacacttgtcattttctcaactgcctgaagcagtacagtgga
gaagaggaattcatgaagtgtaacagcccacagcagaataagaactgcttgaacaatttt
gatcttacagaatacagacagattctgagtgatgtggctatacgaatttaccatcagttc
atcctcgtgatggaaaacaatctccagccgataatagtgccaggcatgctggagtacgag
agtctgcagggcatttccggtctgaagcccactggtttccggaagcgctcatccagcatc
gatgacaccgatgcctataccatgacgtccatcctgcagcagctgagttacttctacagc
accatgtgtcagaacggcctggaccctgagattgtgaggcaggcggtcaagcagctgttc
tacctgatcggggcggtgaccctcaacagcctcctccttcgaaaggacatgtgctcctgc
aggaaagggatgcagatcaggtgcaacatcagcttcctggaagaatggctaaaagataag
aatttgcagaacagcttagccaaggagactctggagcccctctctcaggcagcctggttg
cttcaggttaagaagaccacagacagcgatgccaaggagatctcccagtgctgtacttcc
ctgtctgccgtgcagatcataaagatccttaattcatacacacctatagacgactttgag
aaaagagtcaatccatccttcgttcgcaaagtacaggctcttctgaataaccgtggtgac
tcgtcacagctgatgctggacactaaatatctttttcaagtcacatttcctttcaccgcc
tcaccgcacgccctggagatgacccagatccccagcagcttcaagctcggctttctgcgg
agactgtag
DBGET
integrated database retrieval system