KEGG   Rhodococcus opacus PD630: Pd630_LPD01566Help
Entry
Pd630_LPD01566    CDS       T03071                                 

Definition
(GenBank) Putative DNA ligase-like protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
roa  Rhodococcus opacus PD630
Pathway
roa03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:roa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Pd630_LPD01566
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD01566
Enzymes [BR:roa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Pd630_LPD01566
DNA repair and recombination proteins [BR:roa03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Pd630_LPD01566
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AHK28795
UniProt: W8GXY1
LinkDB All DBs
Position
1602638..1604917
Genome map
AA seq 759 aa AA seqDB search
MATAGTRQLTVDGHRLSLTNLGKVLYPESETTKGEVIDYYTRIAPAMLPHVVDRPATRKR
WPNGVDSEPFFEKNLAASAPAWLERRAIEHSDRSVHYPLLNSVAALAWAGQQAALELHVP
QWRFDGPHRGPATRIVFDLDPGPGVGLTECAEVARAVRDLVANLGWTAYPVTSGSKGIHL
YVPLDRKLDGSGASTVAKQVATGLEKLRPELVTATMAKAVRAGKVFVDWSQNNPSKTTIA
PYSLRGRSQPYVAAPRSWDELDDPDLRQLRFEEVLERWESDGDLLAGLDPPIEDAAALAE
YRRKRDPGRTPEPMPDTVQPGEGNSFVIQEHHARRLHYDLRLERDGVLVSWAVPKNVPTT
TGENRLAVHTEDHPLEYLTFSGSIPKGEYGGGEMTIWDTGTYDTEKWRDDEVIVQLHGEQ
VEGRFALIRTKGDQWLMHLMKDQTPGGTHTSELPRGLSPMLASPGTLDGLNADEWAFEGK
WDGIRVIAEISGGELRLTSRAGNDKTRDYARLGWLADSLGDHEVVLDGEVVSFDERGVAN
FGLLQQGNEPHFLAFDVLYLDGVSLLRKKYTDRRRVLEALAAKVDDLVVPPQLHGSAQEA
LDESRGKGWEGVVAKRRESVYLPGKRGSSWIKVKNWRTQEAVIGGWRRGQGGRSTGIGSV
LLGVPEDGGLRYIGRVGTGFTERDLQELASTLGPLETDTSPFVEDLPTADRKGAVWVTPT
LVAEVRFMDWTGSKRLRHPSWRGLRDDKAPEDVEEEVSS
NT seq 2280 nt NT seq  +upstreamnt  +downstreamnt
gtggccacggcgggaactcggcaactgacggtcgacggacatcgcctgtccctgaccaat
ctcggcaaggtcctctacccggaatcggaaacgacgaagggcgaggtcatcgactactac
acgcggatcgcgcccgccatgctcccgcacgtcgtcgatcgccccgccacccgtaaacgc
tggcccaacggggtggacagcgagccgttcttcgagaagaacctcgcggcctccgcaccg
gcgtggttggagcgccgcgcgatcgagcactcggatcggtcggtgcactatccgctcctg
aactcggtcgcggcgcttgcgtgggcgggacagcaggccgcactcgaactgcacgttccg
cagtggcggttcgacggcccgcatcgggggcccgccacccggatcgtcttcgacctcgac
cccggtcccggtgtgggcctgaccgaatgcgcggaggtggcacgggccgtgcgcgacctg
gtcgcgaacctcggctggaccgcgtacccggtcaccagcggcagcaagggtattcacctg
tacgtgccgctcgaccggaagctggacggttcgggcgcgtccaccgtcgcgaaacaggtg
gcgacgggactcgagaagctgcggcccgaactcgtcaccgccaccatggccaaggcggtg
cgcgcgggaaaggtgttcgtcgactggagccagaacaatccgtccaagaccaccatcgca
ccgtattcgctgcggggacgctcccagccgtatgtcgcggcgccgcggagctgggacgaa
ctcgacgaccccgacctacgacagctgcggttcgaggaagtgctcgaacggtgggagtcg
gacggcgacctgctcgccggactcgacccgccgatcgaggacgccgccgccctcgccgag
taccgccgcaagcgtgatcccggacggacacccgagccgatgccggacacggtgcagccg
ggggaggggaacagtttcgtcatccaggaacaccacgcccggcgcctccactacgacctg
cggctcgaacgcgacggggtgctcgtgtcgtgggcggtgcccaagaacgtgccgacgacg
acgggggagaaccggctcgccgtgcacaccgaggatcacccgctcgagtacctgaccttc
tcgggatccatcccgaagggcgagtacggcggcggcgagatgaccatctgggacacggga
acgtacgacaccgagaagtggcgcgacgacgaggtgatcgtccagttgcacggcgagcag
gtggagggccggttcgcgctgatccgcacgaagggcgaccagtggctgatgcatctgatg
aaggaccagacaccgggtgggacgcacacgtccgaactgccccgcggactgtcgccgatg
ctcgcgagccccggcaccctcgacggactcaacgccgacgagtgggctttcgaaggaaag
tgggacgggatcagggtgatcgccgagatcagtggcggcgagctgaggctgacgagccgg
gcgggtaacgacaagacacgcgactatgcgcgattgggttggctggcagactctctcggt
gaccacgaggtggtcctcgacggtgaagtcgtctcgttcgacgagcggggtgtcgcgaac
ttcggcctgctgcagcagggcaacgagccgcacttcctcgcgttcgacgtgctgtatctc
gacggagtgtcgttgttacgcaagaagtacaccgaccggcgccgcgtcctcgaagcgctg
gcggccaaggtggacgacctggtcgttccgccgcaactgcacgggtccgcgcaggaggct
ctggacgagagtcgcggcaagggctgggaaggtgtcgtggccaaacgccgcgaatccgtg
tacctgccgggcaagcgggggtcgagctggatcaaggtgaagaactggcgcacccaggaa
gccgtgatcggcgggtggcgtcggggtcagggcgggagatccacgggaatcgggtcggta
ctgctcggcgtccccgaggacggtgggctgcgctacatcgggcgcgtcggaaccggtttc
accgaacgggatctgcaggaactcgcatccactctgggaccgctcgaaaccgacaccagc
ccgttcgtcgaagacctgcccaccgcagaccgcaagggggccgtgtgggtgacccccaca
ctggtcgcggaggtgcggttcatggattggaccggctcgaagagattgcggcaccccagc
tggcgtggcctcagggacgacaaggcacccgaggacgtcgaagaggaggtctcgtcatga

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