KEGG   Rhodococcus opacus PD630: Pd630_LPD02168
Entry
Pd630_LPD02168    CDS       T03071                                 

Definition
(GenBank) ATP-dependent DNA helicase pcrA
  KO
K03657  DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
Organism
roa  Rhodococcus opacus PD630
Pathway
roa03420  Nucleotide excision repair
roa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:roa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Pd630_LPD02168
   03430 Mismatch repair
    Pd630_LPD02168
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD02168
Enzymes [BR:roa01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.12  DNA helicase
     Pd630_LPD02168
DNA repair and recombination proteins [BR:roa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Pd630_LPD02168
   MMR (mismatch excision repair)
    Other MMR factors
     Pd630_LPD02168
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30
Other DBs
NCBI-ProteinID: AHK29394
LinkDB
Position
2305092..2307452
AA seq 786 aa
MHAGSPLLIVAGAGSGKTAVLTRRIAYLLAERGVMPGQILAITFTNKAAAEMRERVAHLV
GPRANSMWVSTFHSSCVRILRAQAALLPGLNSNFSIYDADDSRRLLTMIAKDLNIDTKRY
SARLLATHISNLKNELVDPEQASADADKDPAELPRLIAKVYGHYQQRLRSANALDFDDLI
GETVAMLQAFPQVAEYYRRRFRHVLVDEYQDTNHAQYMLVRELVGGTADGEDADHRVAPA
ELCVVGDADQSIYAFRGATIRNIEEFERDYPDARTILLEQNYRSTQNILSAANSVISKNT
GRREKRLWTDSGEGELITGYVADNEHDEASFVASEIDKLVDSGDAKFGDVAVFYRTNNSS
RALEEIFIRLGVPYKVVGGVRFYERKEVRDIVAYLRVLANEDDTVSLRRILNTPRRGIGD
RAEACVAVHSEQRGISFAEALRDGGEGRVPLLNTRSQKAIASFLELMDGLRVMLPPETTA
DDVVPDQLGDIGDVVEAVLERTGYRAELAASSDPQDGARLDNLNELVSVAREFSSDARNA
AGLVEPPEDGDVDARDGEPDPGSLAAFLERVSLVADSDQLPDNDEGVVTLMTLHTAKGLE
FPVVFVTGWEDGQFPHMRALGDPTELSEERRLAYVGITRARQRLYLTRAVMRSAWGQPIQ
NPESRFLQEIPSDLVHWRREDPGTGIGSGGAIGGGRARGSGYGGQGFGGGSGYGGGSAGT
PSFGAARSRNNNLVLTVGDRVSHDKYGLGTVLETKGAGPTATVTIDFGSAGKVRLMLIGG
VPMVKL
NT seq 2361 nt   +upstreamnt  +downstreamnt
gtgcacgccggttctccgctgttgatcgtcgcgggtgcgggctcgggcaagacggctgtc
ctcacccgccgcatcgcatatctgctggccgagcggggggtgatgcccggtcagatcctg
gccatcacgttcaccaacaaggctgccgcggagatgcgggaacgcgtcgcccacctcgtc
ggccccagggccaacagcatgtgggtgtccacgttccactccagctgcgtgcggatcctg
cgagcccaggcggcgctgctccccggcctcaactcgaacttctccatctacgacgcggac
gattcgcggcggctcctgacgatgatcgccaaggatctgaacatcgacaccaagcgctat
tcggcgcggctgctcgccacccacatctcgaatctcaagaacgagctcgtcgacccggag
caggcgagcgccgacgccgacaaggatccggcggaactgccgcggctgatcgccaaggtg
tacgggcactaccagcagcggttgcgttcggcgaacgcgctggacttcgacgacctgatc
ggcgagacggtcgcgatgctgcaggcgttcccccaggtggccgaatactaccggcggcgg
ttccgccacgtgctggtcgacgagtaccaggatacgaaccacgcccagtacatgctggtg
cgtgaactggtcggcggaaccgccgacggcgaggacgcggaccaccgggtcgccccggcc
gagctgtgcgtggtgggtgacgcggatcagtcgatctacgcgttccgcggcgcgacgatc
cgcaacatcgaggagttcgagcgcgactacccggacgcccgcaccatcctgctggagcag
aactaccgctccacccagaacattctgtcggcggccaactcggtgatctcgaagaacacc
ggccggcgtgagaagcggctgtggaccgattcgggcgagggcgagctgatcaccggctac
gtcgcggacaacgagcacgacgaggcgtcgttcgtggcgtccgagatcgacaagctcgtc
gattccggcgacgccaagttcggtgacgtcgccgtgttctaccgcaccaacaactcgtcc
cgtgccctcgaagagatcttcatccggctcggcgttccgtacaaggtcgtcggcggagtg
cggttctacgagcgcaaggaggtgcgggacatcgtcgcgtatctccgagtcctcgcgaac
gaggacgacaccgtcagcttgcgccggatcctcaacacgccccgccgcggcatcggcgac
cgcgccgaggcgtgtgtggccgtccactccgagcaacggggcatcagcttcgccgaggcg
ctgcgggacggcggtgagggccgtgtaccgctgctgaacacccgttcccagaaggccatc
gcgtccttcctcgaactcatggacggactgcgggtgatgctcccgccggagaccactgcg
gatgacgtcgtccccgaccagctcggcgacatcggtgacgtcgtcgaggcggtcctggag
cggacgggctaccgcgccgaactcgcggcgagcagtgacccccaggacggggcgcgcctc
gacaacctcaacgaactcgtgagcgtggcgcgtgagttcagctccgacgcgcggaacgcg
gccggcctcgtggaaccgccggaggacggcgacgtcgacgcccgggacggtgaacccgac
cccggttccctcgccgcgttcctcgaacgcgtgtcgctggtcgcggattccgatcagcta
cccgacaacgacgaaggcgtcgtcacgctgatgaccctgcacaccgcgaaggggctcgag
tttcccgtcgtcttcgtcaccgggtgggaagacggtcagttcccgcacatgcgagcgctc
ggcgaccccacggaactgtcggaggagcgccggctcgcgtacgtcggcatcacccgtgcc
cggcagcggctgtatctgacgcgggccgtcatgcggtcggcgtggggccagcccatccag
aacccggagtcgcggttcctgcaggagatcccgtcggatctcgtgcactggcgtcgtgag
gacccgggcaccggtatcggttccggtggtgcgatcggcggtggccgtgcgcgtggatcg
ggatacggcggtcagggcttcggcggcggttccggttacggcggcgggtcggcaggcacg
ccgagcttcggcgccgcccgctcccgcaacaacaacctggtgctcacggtcggcgaccgt
gtcagtcacgacaagtacggcctcggcacggtcctcgagaccaagggcgccggcccgacc
gcgacggtcaccatcgatttcggcagcgcgggcaaggtccggctgatgctgatcggtggc
gtcccgatggtcaagctgtag

KEGG   Rhodococcus opacus PD630: Pd630_LPD03043
Entry
Pd630_LPD03043    CDS       T03071                                 

Definition
(GenBank) ATP-dependent DNA helicase pcrA
  KO
K03657  DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
Organism
roa  Rhodococcus opacus PD630
Pathway
roa03420  Nucleotide excision repair
roa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:roa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Pd630_LPD03043
   03430 Mismatch repair
    Pd630_LPD03043
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD03043
Enzymes [BR:roa01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.12  DNA helicase
     Pd630_LPD03043
DNA repair and recombination proteins [BR:roa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Pd630_LPD03043
   MMR (mismatch excision repair)
    Other MMR factors
     Pd630_LPD03043
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 PDDEXK_1 UvrD_C_2 AAA_30 DUF3458_C
Other DBs
NCBI-ProteinID: AHK30266
LinkDB
Position
3240894..3244241
AA seq 1115 aa
MTVRIDPVELAIGLGQHPPTPEQAAVIAAPLGPTLVVAGAGAGKTETMAARVVWLVANGV
VDPEAVLGLTFTRKAAQQLTARIRKRLARLAGSDLLRRVDPSGDLRSRILAGEPEVSTYH
SYAGRLLSEHGLLLPIEPSATLLSETELWQLAHRVVSSWDGDLDTDRNPASVTEAVLALS
GQLAEHLVEPDDLREAHTELDKLVHTLPAGPRQRGGPGKELLDILDTQHRRVDLLPLVQR
LADTLRREGALDFGSQMSLAARVAADHPEVGVAERTRFRVVLLDEYQDTGHSQRVLLSSL
FGGGLDGELALTAVGDPMQSIYGWRGASAANLPRFATDFPLTNGDPAPTLELLTSWRNPP
EALALANMASASLRERGVSVSTLRARPQAVPGDVRLALTGDVVQEREWVADRIAEQYADA
TNRGEDPPTAAVLIRRNADAAPIAEVLRSRGLPVEVVGLGGLLHTPEVADVIAMLRVVAD
PMAGSAAVRMLTGARWQIGAADLTALSRRASELAIGTGYGTTGAVTDSSALADAVGEALP
GEHAEQAGLADALADPGPAERYSQVGYARITAVAAELASLRERIGQPLTELVAEVERVLG
IGIEAQARTRRSARGSAGREHLDAFADVVAGYASRTSATVTGLLAFLSAAESVEKGLAPG
EVEVDPHRVQVLTVHSAKGLEWEVVAVPHLTAGVFPSRTASGSWLGAVGELPPSLRGDRA
RPGESADGVPVLELENLYDRKDLEEAVKAHKAALAARKLDEDRRLFYVALTRTERVLFAS
GHHWAESGTEPKGPSEFLTELRDTVTDEEHEGIGIVDIWAPAPEPDEQNPLTSTPKSAVW
PRDPLGLRRESVERGAALVVAALKSAGETAPVGEDDDPENWAADVDALLAEREARANART
EVVLPGQLSVSQLVELEADPDALAARLRRPLPYPPNPLARRGTAFHAWVERRFGATRLLD
LDELPGAADTGAGPDTDLATLQDAFLRSSWADRNPTEVEVPFETSVAGTVLRGRIDAVFT
DPDGGWTVIDWKTGAEPSAANEKAVVMQLAAYRLAWAELMDVPIERVRAAFHYVRTGRTI
APDHLPDADALARLLRSAGSPEEEFRPDAEPSATR
NT seq 3348 nt   +upstreamnt  +downstreamnt
atgaccgtccgtatcgacccggtggaactcgccatcggcctggggcagcatccaccgacc
ccggagcaggccgccgtcatcgcggcgcccctcggcccgaccctcgtcgtcgcgggggca
ggtgcgggcaagaccgagacgatggcggcccgcgtcgtgtggctggtggccaacggtgtc
gtcgaccccgaggcggtgctggggctcacgttcacccggaaggcggcgcagcagctgacc
gcccggatcaggaaacgccttgcccggctggcgggttcggacctgctccgcagggtcgac
ccgagcggcgacctgcgatcgcggatcctcgcgggcgaaccggaagtcagcacctaccac
tcctacgccgggcgactgctgtccgaacacgggctcctgctgcccatcgaaccctcggcg
acactcctgtcggagacggaactgtggcagctggcgcaccgggtggtcagctcgtgggac
ggcgacctcgacaccgaccggaatccggcgtccgtcaccgaagccgtgctcgcgttgtcc
gggcagctggccgagcacctcgtcgaaccggacgatctgcgggaggcgcacaccgaactc
gacaagctcgtccacaccctgcccgccggaccgcgacagcgcgggggccccggcaaggaa
ctgctcgacatcctcgacacccagcaccggcgggtggacctccttcccctggtacagcgt
ctcgcggacacactgcgccgcgaaggtgcgctcgacttcggcagccagatgtcgctcgcg
gcacgcgtcgccgcggaccaccccgaggtcggagtcgccgagcggacccgcttccgggtg
gtgctgctcgacgagtaccaggacacgggacactcgcagcgggtgctgctgtcgtccctg
ttcggtggcggtctcgacggcgaactcgcgctcaccgcggtgggcgaccccatgcagtcg
atctacggctggcggggtgcctcggcggccaacctgccccgcttcgcgacggacttcccg
ctgacgaacggagatccggcgccgaccctggaactgctcacgagctggcgcaacccgccg
gaggccctggcgctggccaacatggcgtcggcgtccctgcgtgagcggggcgtgtcggtc
agcacgctgcgggcgcgaccacaggccgtcccgggtgatgtgcggctggccctcaccggt
gacgtcgtgcaggaacgcgaatgggtggccgaccgcatcgccgaacagtacgcggacgcc
acgaaccggggcgaggacccgccgaccgccgcggtgctgatccgccgcaacgccgacgcc
gcaccgatcgcggaggtgctgcggtcccggggtctgccggtcgaagtggtcggtctcggc
ggacttctccacacccccgaggtggccgacgtgatcgcgatgctccgggtggtcgccgac
ccgatggcgggcagtgccgccgtgcggatgctgaccggggcgagatggcagatcggggcc
gccgacctgacggcgctgtcgcggcgagcctccgaactggccatcggaaccggttacggc
accaccggcgccgtcaccgattcgtccgcactggccgacgccgtcggcgaggcgctgccc
ggtgaacacgccgagcaggccgggctggcggacgcactggcggatcccggtcccgccgaa
cgctattcgcaagtcggctacgcacggatcaccgccgtcgcggcggagttggcgtctctg
cgggagcggatcgggcagccgctcaccgagctggtggccgaggtcgaacgggtgctgggt
atcggcatcgaggcgcaggcccggacgcgccggtcggcgcgggggagtgcgggccgcgaa
catctcgacgccttcgccgacgtcgtcgccgggtacgcgagtcgtacgtcggccaccgtc
accggactgctcgccttcctgtcggccgcggagtcggtcgaaaagggtttggcgccgggc
gaagtcgaggtggacccacaccgcgtccaggtgctgacggtgcactccgccaaggggctg
gagtgggaagtggtggcggtaccgcacctgacggccggcgtctttccctcgaggacggcg
tccgggtcctggctcggagccgtcggtgaactgccgccctcgctgcgcggagaccgtgcg
cggccgggggagtcggccgacggcgtgcccgttctcgagctcgagaacctgtacgaccgg
aaagacctcgaggaggccgtgaaggcgcacaaggcggcgctggcggcccgcaagctcgac
gaggaccgcaggctgttctacgttgcactcacccgcaccgaacgggtgctgttcgcgtcg
ggtcaccactgggcagaatccggaaccgagcccaagggtccgtcggagttcctcaccgaa
ctgcgtgacacggtgaccgacgaggagcacgagggaatcgggatcgtcgacatctgggcg
cccgcacccgaacccgacgagcagaacccgctgaccagtacccccaagtcggctgtgtgg
ccgcgggatccgctcgggctccgccgggagtcggtcgagcgcggcgcggcgttggtcgtc
gcggcgctgaagagtgccggcgagacggcaccggtaggcgaggacgacgatcccgagaac
tgggcagccgacgtcgacgcccttctcgccgagcgggaggcgcgggcgaacgcccgcacc
gaggtggtgttacccggtcaattgtcggtgagccagctcgtcgaactcgaagccgacccg
gacgccctggccgcccggctgaggcgtccgctgccgtacccgccgaatccactcgcgcgg
cgcggtaccgcgttccacgcctgggtggagcgccgcttcggggccacccggctgctcgac
ctcgacgagctgcccggtgccgccgacaccggagcgggccccgacaccgacctcgcgacc
ctgcaggacgcgttcctgcgctcgtcctgggccgaccgcaacccgaccgaggtcgaggtg
ccgttcgagacgtcggtggcggggacggtgctgcgcggccggatcgacgcggtattcacc
gaccccgacggggggtggacggtgatcgactggaagaccggcgccgagccgagcgcggcc
aacgagaaggccgtcgtgatgcagctggccgcgtaccggctggcgtgggccgaactgatg
gacgttccgatcgagcgggtgcgcgccgcgttccactacgtgcggaccggacggacgatc
gcaccggatcacctgcccgacgccgacgcgctcgcccgtctgctccgttccgccggttct
cccgaagaggagttcaggcccgacgccgagccttcagcgactcggtga

KEGG   Rhodococcus opacus PD630: Pd630_LPD03048
Entry
Pd630_LPD03048    CDS       T03071                                 

Definition
(GenBank) putative DNA helicase II
  KO
K03657  DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
Organism
roa  Rhodococcus opacus PD630
Pathway
roa03420  Nucleotide excision repair
roa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:roa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Pd630_LPD03048
   03430 Mismatch repair
    Pd630_LPD03048
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD03048
Enzymes [BR:roa01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.12  DNA helicase
     Pd630_LPD03048
DNA repair and recombination proteins [BR:roa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Pd630_LPD03048
   MMR (mismatch excision repair)
    Other MMR factors
     Pd630_LPD03048
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 HRDC UvrD_C_2 AAA_30
Other DBs
NCBI-ProteinID: AHK30271
LinkDB
Position
3247058..3249196
AA seq 712 aa
MMDAMSAAGAAEVTSTGLDPEQSAAVLAPRGPVCVLAGAGTGKTRTITRRIAHLVASGHV
AAGQVLAVTFTARAAGEMRGRLRSLGIGDGGAQVQARTFHAAALRQLRYFWPQVIGDTEW
RLLDRKFAVVSSAAGRVGLSTSTESVRDLASEIEWAKASLIAPEDYPRAVAKLRREAPVD
AAKVAEVYHGYEQLKARGQDGMLLDFDDLLLHTAAALEEHSAVAEEFRDRYRCFVVDEYQ
DVTPLQQRVLDAWLGERDDLTVVGDANQTIYSFTGATPNYLLDFSRRFPEATVVRLERDY
RSTPEVVSMANRVIGAARGRIAGTRLQLIGQRDSGPEPSFVEFDDEPAEAAGVARTIKRL
IASGTPAAEIAVLYRINAQSEVHEQALTKLDIPYQVRGGEGFFTRTEVRQAVAALRQAAG
RDDLPDAVGADLVTLVRAVLAPLGLTDAEPAGAQARERWSSLSALVALTEEQLTQDPELT
LDALLRELSLRAEARHPPVVQGVTLASLHAAKGLEWDAVFLVGLTDGTLPIQHVLGDSNS
APDEAAVEEERRLLYVGVTRAREHLQMSWALSRNEGGRKSRRRSRFLHGLIPEDSPASRI
AAPVKSNKKRPRCRLCGKQLIGTTSTMLGRCEGCPSNVDVELLESLRSWRLEKSRELKVP
AYVVFSDNTLTALAEQRPQDDRGLVAIPGIGAKKLEQFGEDVLGVIKGSGSP
NT seq 2139 nt   +upstreamnt  +downstreamnt
atgatggacgccatgtcagcagccggcgcagcagaggtgacgagtaccggtctcgatccc
gaacagtccgcagcggtactcgctccccggggtccggtgtgtgtgctggcgggggccgga
acagggaagacccggaccatcacccggcgtatcgcgcacctcgtggccagtgggcacgtc
gccgcggggcaggtgctggcggtgacgttcacggctcgcgcggcaggcgagatgcgtggc
cggctgcgcagcctggggatcggcgacgggggagcgcaggttcaggcgcgcacgttccac
gccgccgcgctgcggcagctgaggtacttctggccgcaggtgatcggcgacacggagtgg
cggctgctggaccgcaagttcgcggtcgtgtcgtccgccgccggacgggtcggactgtcc
acaagcacagagagcgtccgcgacctggcgagcgagatcgaatgggccaaggcctcgctg
atcgcgccggaggactacccgcgcgcggtggcgaagttgcgccgggaggcgccggtcgac
gccgcgaaggtcgccgaggtatatcacggctacgagcagctgaaggcccgcggccaggac
gggatgctcctcgatttcgacgatctcctgctccacacggcggcggcgctcgaggagcat
tccgctgtcgccgaggagttccgcgaccggtaccggtgcttcgtcgtggacgagtaccag
gacgtcactccgctgcagcagcgagtcctcgacgcctggctcggggagcgggacgacctc
accgtcgtcggtgacgccaaccagaccatctattcgttcaccggcgccacacccaactac
ctgctcgacttctcgcgccggttcccggaggccaccgtcgtgcgcctcgagcgcgactac
cgttcgacccccgaggtcgtgtcgatggcgaaccgggtgatcggagcggcccgcggcagg
atcgcgggcacccgcctgcagctgatcgggcaacgcgactccgggccggagccgagtttc
gtcgagttcgacgacgagccggccgaggcagccggggtggcgcgcacgatcaagcggctc
atcgcctccggcactccggccgcggagatcgcggtcctgtaccggatcaacgcccagtcc
gaggtacatgagcaggcgctgacgaaactcgacatcccgtaccaggtccggggaggtgag
ggattcttcacccgcaccgaggtgcgtcaggccgtggcggcgctgcgccaggccgctggt
cgtgacgacctgccggatgcggtcggcgccgacctggtcacgctcgtccgcgccgtcctc
gctccgctggggctgaccgacgcggaaccggcgggtgcgcaggctcgcgaacggtggtcg
tcgctgtcggcgctggtcgcgctcaccgaggaacagctgacccaggatccggagttgacc
ctcgacgcgctgttgcgcgaactgagtctgcgggccgaggcgcggcatccacccgtcgtg
cagggtgtgacactcgcatccctgcacgccgccaaggggctcgagtgggacgccgtgttc
ctcgtcgggctcaccgacggaacgctgcccatccagcacgtgctcggcgactccaactcg
gcaccggacgaggcggccgtcgaggaggaacgccggttgctgtacgtcggcgtgacccgc
gcccgggagcacctgcagatgtcgtgggcactgtcccggaacgagggcggccgcaagtcg
cggcgccgttcgcggttcctgcacggactcatccccgaagattcaccggcctcgcggatc
gcggcgcccgtcaagagcaacaagaagcgtccacggtgccggctgtgcggaaaacagctg
atcgggacgacctcgaccatgctcggtcgctgcgaggggtgcccgtccaatgtcgacgtg
gaactgctcgaatcgctgcggtcgtggcggctcgagaagtcgcgggagctgaaggttccg
gcgtacgtggtgttcagcgacaacacgttgacggctctcgccgagcagcggccgcaggac
gatcgcgggctcgtcgcgatccccgggatcggtgcgaagaagctcgagcagttcggcgag
gacgtcctcggtgtgatcaagggaagcggtagtccctga

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