KEGG   Rhodococcus opacus PD630: Pd630_LPD02891
Entry
Pd630_LPD02891    CDS       T03071                                 

Definition
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
  KO
K01142  exodeoxyribonuclease III [EC:3.1.11.2]
Organism
roa  Rhodococcus opacus PD630
Pathway
roa03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:roa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Pd630_LPD02891
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD02891
Enzymes [BR:roa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     Pd630_LPD02891
DNA repair and recombination proteins [BR:roa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     Pd630_LPD02891
SSDB
Motif
Pfam: Exo_endo_phos Prok-RING_2 Exo_endo_phos_2 COMM_domain
Other DBs
NCBI-ProteinID: AHK30114
LinkDB
Position
3097466..3098272
AA seq 268 aa
MPHIITTVNVNGVRAAARKGLTEWIERTEADVVCLQETRASDEQLAETLAPALEGGWNLV
SAEPSSKGRNGVAILSRKPADAFRVGHGDDEFATAGRYLEADFDDLTVASLYLPSGEAQT
PRQEEKERFMDSFARYLTDTAAAAVTAGRHVVVCGDWNIAHTELDLKNWKTNKKNSGFLP
NEREWLGALFAEDAYWTDVVRQLNPDVAGPYSWWSYRGKAFDNDSGWRIDYQIATRELAE
RAKQAVVERAETYDQRWSDHAPVTVQYR
NT seq 807 nt   +upstreamnt  +downstreamnt
gtgccacacatcatcaccaccgtcaatgtcaacggcgtgcgcgccgccgcccgcaagggg
ctcaccgagtggatcgagcgcacggaggccgacgtcgtctgcctgcaggagacgcgggcg
tccgacgagcagctggccgagacgctcgcacccgccctggagggcggatggaacctggtg
tccgcggagccgtcgtcgaaggggcgcaacggcgtcgcgatcctgtcccggaaacctgcc
gacgccttccgcgtcggccacggtgacgacgagttcgcgaccgcgggccgctacctcgag
gccgacttcgacgacctgaccgtcgcgagcctctacctgccctccggggaggcccagaca
ccccggcaggaggagaaggagcggttcatggactccttcgcccggtacctcaccgacacc
gcagcggccgccgtcacggcgggccggcacgtcgtggtctgcggcgactggaacattgcc
cacaccgaactcgacctgaagaactggaagaccaacaagaagaactccggatttctcccg
aacgagcgggagtggctcggggccctgttcgccgaagacgcgtactggaccgacgtggtc
cggcagctgaatcccgacgtcgccggaccgtactcgtggtggtcgtaccgcgggaaggcg
ttcgacaacgactccggctggcgcatcgactaccagatcgccacccgggaactggcggag
cgggccaagcaggccgtcgtcgagcgcgccgaaacctacgaccagcggtggtccgaccac
gcgccggtcaccgtccagtaccggtga

KEGG   Rhodococcus opacus PD630: Pd630_LPD04331
Entry
Pd630_LPD04331    CDS       T03071                                 

Definition
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
  KO
K01142  exodeoxyribonuclease III [EC:3.1.11.2]
Organism
roa  Rhodococcus opacus PD630
Pathway
roa03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:roa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Pd630_LPD04331
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD04331
Enzymes [BR:roa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     Pd630_LPD04331
DNA repair and recombination proteins [BR:roa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     Pd630_LPD04331
SSDB
Motif
Pfam: Exo_endo_phos
Other DBs
NCBI-ProteinID: AHK31544
UniProt: W8H9B4
LinkDB
Position
complement(4547499..4548413)
AA seq 304 aa
MRTATFNVNGIRAAQRRGFEDWLGDRGPDVVALQEVRARAEAIPPGVFGDYHLTYDEGDV
AGRNGVAVLTRRAPVAVRTWSGTALIRAPGEMHTESVALDPEPLARGLGEFANQGRYVEV
DLDEAPITVASMYLPKGGLPAHLQKPGRMREAPDGGARYDRKMRFLSAFARQLTRSRRTA
RARGRELLLMGDLNIAHTRSDVRNWRRSNQAEGFLPEEREWFDSILSPRTLVDVVRRQHP
GVDGPYSWWSWLGQSFVNDIGWRIDYHLATPQLARAAVTAGTDREPAADRRMSDHAPVVV
DYDF
NT seq 915 nt   +upstreamnt  +downstreamnt
gtgcgaaccgcgaccttcaacgtcaacgggatccgcgcggcgcagcggcgcggcttcgag
gactggttgggcgaccgcggccccgatgtggtcgcgcttcaggaggtgcgggctcgtgcc
gaggccatcccgccgggggtgttcggcgactaccacctcacatacgacgagggggacgtc
gcgggccgcaatggtgtcgcggtcctgacccggcgtgcgcccgtcgcagttcgaacgtgg
agtggcacggcgctgatacgtgcaccgggtgaaatgcacaccgaaagcgtcgcactggat
ccggagccgctggctcgggggctgggagagttcgcgaaccagggtcggtacgtcgaggtc
gacctcgacgaggcgccgatcacggtggcatcgatgtacctgccgaagggtggtcttccg
gcccacctccagaagcccgggcggatgcgggaggcgcccgacggcggcgcccggtacgac
cgcaagatgcgcttcctctccgcgttcgcgcgacagctgacccgctcgcggcgcacggca
cgcgcacgaggcagggagcttctgctgatgggtgacctcaacatcgcgcacactcgttcc
gacgtacggaactggcggcgtagcaaccaggccgagggatttctgccggaggagcgcgag
tggttcgactccatcctgtcgccgcgcaccctcgtcgatgtcgtccggcgacagcatccg
ggcgtcgacggtccgtactcgtggtggtcgtggctggggcagtcgttcgtgaacgacatc
ggctggcgcatcgactaccacctcgcgacgccgcaactggcacgagcggcggtcacggcc
ggcaccgaccgtgagccggcggccgaccgccggatgagcgatcacgctccggtcgtcgtg
gactacgacttctga

KEGG   Rhodococcus opacus PD630: Pd630_LPD06361
Entry
Pd630_LPD06361    CDS       T03071                                 

Definition
(GenBank) Exodeoxyribonuclease III
  KO
K01142  exodeoxyribonuclease III [EC:3.1.11.2]
Organism
roa  Rhodococcus opacus PD630
Pathway
roa03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:roa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Pd630_LPD06361
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD06361
Enzymes [BR:roa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     Pd630_LPD06361
DNA repair and recombination proteins [BR:roa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     Pd630_LPD06361
SSDB
Motif
Pfam: Exo_endo_phos DUF2204
Other DBs
NCBI-ProteinID: AHK33548
LinkDB
Position
6572995..6573807
AA seq 270 aa
MAAVRIATWNVNSVRARTDRILDWLQRSDVDVLAMQETKCKDEQFPYERFRELGYEVAHV
GLSQWNGVAIASRVGLDDVQIGFEDQPGFHKDPEVAPAQEARAIGATCNGVRIWSLYVPN
GRELADPHYTYKLDWLAKLHTDAVGWLGQNPDAQIALVGDWNVAPTDEDVWDPALFEGKT
HTSAPEREAFQAFVESGFADVVRPHTPGPGVYTYWDYTQLRFPKKQGMRIDFVLGSPALA
GRVDKAEIDRNERKGKGASDHAPVIVDLGD
NT seq 813 nt   +upstreamnt  +downstreamnt
gtggctgccgtgcgcatcgcaacctggaacgtgaactctgttcgtgcccgtaccgaccgg
atcctggactggctccagcggtccgacgtcgacgtgctggcgatgcaggaaaccaagtgc
aaggacgagcagttcccgtacgagcgtttccgcgaactgggctacgaggtcgcgcacgtg
ggcctcagccagtggaacggcgtcgcgatcgcgtcccgcgtgggtctcgacgacgtgcag
atcggattcgaggatcagcccggtttccacaaggacccggaggtcgcgcccgcgcaggaa
gcccgcgccatcggcgccacgtgcaacggcgtccgcatctggagcctgtacgtccccaac
ggccgtgagctcgccgacccgcactacacgtacaagctcgactggctggcgaagttgcac
accgacgcggtcgggtggctggggcagaacccggacgcgcagatcgcgctggtcggcgac
tggaacgtggcccccaccgacgaggacgtctgggatccggcgctgttcgagggcaagacg
cacacgtccgcccccgagcgtgaggccttccaggcattcgtcgaatccggtttcgccgac
gtcgtccggccgcacacccccggtcccggcgtctacacctattgggattacacccagttg
cggttcccgaagaagcagggaatgcgcatcgacttcgtgctgggatcgcctgccctcgcc
ggccgtgtcgacaaggccgagatcgaccgcaacgaacgtaagggcaagggcgccagcgac
catgcgccggtcatcgtcgacctcggcgactga

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