KEGG   Rhodococcus opacus PD630: Pd630_LPD02926
Entry
Pd630_LPD02926    CDS       T03071                                 

Definition
(GenBank) Putative DNA glycosylase
  KO
K05522  endonuclease VIII [EC:3.2.2.- 4.2.99.18]
Organism
roa  Rhodococcus opacus PD630
Pathway
roa03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:roa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Pd630_LPD02926
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD02926
Enzymes [BR:roa01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.-  
     Pd630_LPD02926
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Pd630_LPD02926
DNA repair and recombination proteins [BR:roa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Pd630_LPD02926
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH zf-FPG_IleRS
Other DBs
NCBI-ProteinID: AHK30149
LinkDB
Position
complement(3129347..3130096)
AA seq 249 aa
MPEGDTVWRTANSLRDALAGKVLTRCDVRVPRYATVDLSGRLVDEVVSRGKHLLIRVGDY
SIHTHLKMEGAWHIYAPDTKWRRPTHQARIVLATDDRVAVGFSLGITEILGRDDEESAVG
HLGPDLLGPDWDADTAIRNLRAAGDQPIGLALVDQRNLAGLGNVYRNEICFLRGVHPYTP
SSGVADLPALVTLAHRMIHIDKNNSVRHRPWVYGRAGKRCRRCGTVIEGHDLGQQQIFFC
TYCQPPMVD
NT seq 750 nt   +upstreamnt  +downstreamnt
atgcccgaaggcgatactgtctggcgcaccgccaactcgcttcgcgacgccctcgcgggc
aaggtgctgacccgctgcgatgtgcgggtcccccggtacgccaccgtcgacctgtccggc
cggctcgtcgacgaggtggtcagccgcgggaagcacctcctcatccgggtcggcgactac
tcgatccacacgcatctgaagatggaaggtgcgtggcacatctacgcgccggacacgaag
tggcgccgtcccacgcaccaggcccggatcgtgctcgccaccgacgacagggtggcggtc
ggattctcgctcggcatcaccgagattctggggcgtgacgacgaggagtccgcggtcggc
cacctcggccccgacctgctggggccggactgggacgccgacacggcgatccgcaacctg
cgggcggccggcgaccagcccatcggtctcgccctggtcgaccagcgcaacctggccggt
ctcggcaacgtgtaccgcaacgagatctgcttcctccgcggcgtccacccctacactccg
tcgagcggcgtggccgacctgcccgcgctggtcacgctcgcgcatcgcatgattcacatc
gacaagaacaactccgtccgccatcggccatgggtgtacgggcgtgccggaaagcgttgc
cgccgttgcgggacggtgatcgaaggccacgacctcggtcagcagcagatcttcttctgc
acgtactgccagccgccgatggtggattag

KEGG   Rhodococcus opacus PD630: Pd630_LPD05495
Entry
Pd630_LPD05495    CDS       T03071                                 

Definition
(GenBank) Putative DNA glycosylase
  KO
K05522  endonuclease VIII [EC:3.2.2.- 4.2.99.18]
Organism
roa  Rhodococcus opacus PD630
Pathway
roa03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:roa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Pd630_LPD05495
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD05495
Enzymes [BR:roa01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.-  
     Pd630_LPD05495
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Pd630_LPD05495
DNA repair and recombination proteins [BR:roa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Pd630_LPD05495
SSDB
Motif
Pfam: H2TH zf-FPG_IleRS Fapy_DNA_glyco FbpA
Other DBs
NCBI-ProteinID: AHK32696
UniProt: W8H4D7
LinkDB
Position
complement(5668113..5668910)
AA seq 265 aa
MPEGHTLHRLARLHQRRFAGSPVRVLSPQGRFAEDAALVDGRVLVTSEAWGKHLWHHYES
GLVVHVHLGLYGAFTESAVPMEPPVGQVRMRMVGAEFGTDLRGPTACEVLHPPQVAAIEA
RLGPDPLRKDADPDKAWKRISASKTPIGALLMDQAVIAGIGNVYRAEVLFRHGIDPDRPG
RALSRDEWDALWADLVALMKVGVRRGTMHVVRPEDDHGDPAYAKDRPRTYVYRRAGSPCR
ICGTPVAHSVMKGRNLFWCPRCQPS
NT seq 798 nt   +upstreamnt  +downstreamnt
ttgcccgaaggtcacaccctgcaccggctggcccggctgcaccaacgccggttcgccggt
tcgccggtgcgggtgctgagcccgcagggcagattcgcggaggacgcggccctcgtcgac
ggccgtgtcctggtcacgtccgaggcctggggtaaacacctgtggcatcactacgagtcc
ggactcgtagtgcacgtccacctgggactgtacggagcgttcacggaatcagccgtcccc
atggaaccgccggtcgggcaggtcaggatgcggatggtcggcgccgagttcggcaccgac
ctccgcggtccgaccgcctgcgaggttctccatccgccacaggtcgccgccatcgaggcg
cggctgggcccggacccgctgcggaaggacgccgaccccgacaaggcgtggaaacgcatc
tcggcgtcgaagaccccgatcggggctctgctgatggatcaggccgtgatcgcgggcatc
ggcaacgtgtaccgggcggaggtcctgttccggcacggcatcgaccccgacaggcccggc
cgcgcgctgtcccgtgacgagtgggacgcgctgtgggccgacctcgtcgccctgatgaag
gtcggggtccgccgcggcacgatgcacgtcgtccgtcccgaggacgatcacggcgatccg
gcgtacgcgaaggaccgtccccggacgtacgtctaccggcgggcgggatcaccgtgccgg
atctgcggcaccccggtggcccactcggtcatgaagggccgcaacctcttctggtgtccg
cgctgccagccctcctga

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