Rhodococcus opacus PD630: Pd630_LPD04415 Help Entry Pd630_LPD04415    CDS       T03071                                  Definition (GenBank) excinuclease ABC, A subunit   KO K03701   excinuclease ABC subunit A Organism roa  Rhodococcus opacus PD630 Pathway roa03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:roa00001]  09120 Genetic Information Processing   09124 Replication and repair    03420 Nucleotide excision repair     Pd630_LPD04415  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:roa03400]     Pd630_LPD04415 DNA repair and recombination proteins [BR:roa03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     GGR (global genome repair) factors      Pd630_LPD04415   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      Supressor       Pd630_LPD04415 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  UvrA_DNA-bind ABC_tran AAA_16 AAA_29 AAA_25 AAA_33 DnaJ_CXXCXGXG AAA_21 RsgA_GTPase Anti-TRAP APS_kinase AAA_22 NACHT MeaB Viral_helicase1 DUF4350 NTPase_1 cobW Motif Other DBs NCBI-ProteinID:  AHK31628 UniProt:  W8HEX2 LinkDB All DBs Position complement(4624091..4626628) Genome map AA seq 845 aa AA seqDB search MPTFDPAPQAEPLRAQDFNGIAVFDASEHNLAHVDVFIPRDCIVAFTGVSGSGKSSLAFG TIYAEAQRRFLESVTPYARRLMDQIGAPRVGDITGLPPAVALQQARGHTSARSSVGTLTH ISNVLRMLFSRVGTYPPGAPVLDSNAFSPNTPEGGCPACHGLGRTHDVDIDALVPDPSRS IRGGAVAAWPGAWLGKNYRDILATLGIDVDRPWSELPEDQREWILTTDEQPTVTVSPVRD PGKMVRDYQGTFSSARTYVLHTYATTKSATQRAKVARYLVSRPCSACNGKRLRPEALAVR FAGLDIADATELSLAALASVLDAVVASRDSAASDATERASASLVDNLRGRLAGLTELGLG YLSLGRSTTTLSPGELQRLRLATQLQSGLFGVLYVLDEPSAGLHPADTEALVTAVRRLRA AGNSVFVIEHNLDVVRAADWIVDVGPGPGEHGGRVLYSGEVDGLAHVPESVTRRYLFGTP ESYPDPGPPDRWIELAGITMHNLRDLTVRIPLGVLTAVTGVSGSGKSTLVSRVLTDVVAQ HVGLDSEPRTDTGGDEADDSTVVLAEEREKDTEPTVVAAHGLGHINRLVRVDQTPIGRTP RSNLATYTGLFDVIRKLFAAHPVARERGYSPGRFSFNVSGGRCEECEGAGSITIGMLFLP EASAPCPACAGARYNAETLEVLVDGRTIADVLAMTVDDARAFLSHVPAAAKSLDMLVEVG LGYLRLGQSATTLSGGEAQRVKLASELQRIRSGHTLYVLDEPTTGLNPADVDRLMVVLRR LVAAGNTVVLVEHDMPVIASADWMIDLGPGGGDSGGRIIASGPPTVVAETAGSATAAYLA RHLAR NT seq 2538 nt NT seq  +upstreamnt  +downstreamnt gtgcccaccttcgatcctgcaccgcaggccgaaccgctacgtgcccaggacttcaacggc atcgcagtgttcgacgccagtgaacacaacctcgcccacgtcgatgtgttcattccccgg gactgcatcgtcgcctttaccggggtctcgggatcggggaagtcgtcgttggccttcggc accatctatgccgaagcgcaacgacgattcctcgagtccgtgaccccgtacgcacgccgg ctgatggatcagatcggagcgcccagggttggggacatcaccgggcttccaccggcggtc gccttgcagcaggcccgcggtcacacgtccgcccgatcgtcggtcggcaccctcacccac atctcgaacgtgctgcggatgctgttctcccgagtcggtacctacccgccgggtgccccc gttctcgactcgaacgcgttctcgcccaacacacccgaaggcggatgcccagcctgccac gggctcggccgtacccacgacgtcgacatcgatgccctggtgccggacccgagccgaagt atccgcggcggcgccgtcgccgcatggccaggtgcctggctgggaaagaactaccgcgac atcctcgcaaccctcggaatcgacgtggaccgcccctggtccgagctcccggaagaccag cgtgagtggatcctcaccaccgacgagcaacccaccgtcacggtgtcacccgtgcgcgac ccgggcaaaatggtgcgcgactaccagggaacgttctcgagtgcccgcacctacgttctg cacacctacgcgacgacgaagagcgcaacccagcgggcgaaggtcgcccgatatctggtg tcccgaccctgcagtgcatgcaacggcaaacggctgcgccccgaggcgctggctgtccgg ttcgccggcctcgacatagccgacgccacggaactgtcactggccgctctggcctcggtc ctcgacgccgtcgtcgcatcccgcgattccgccgcaagcgacgcgacagaacgagcatcg gcgtccctggtagacaaccttcgcggacgcctcgcgggtctgaccgaactcgggctggga tacctgagtctcggccgatcgaccaccaccctctcgccgggagaacttcagcgactgcgg ctggccacccagctgcaatcgggtctgttcggagtgctgtacgtcctcgacgaaccgtcc gcaggccttcatcccgccgacaccgaggcactggtcaccgccgtgcggcggctgcgcgcg gcaggtaactccgtcttcgtcatcgaacacaacctcgacgtcgtccgggcggcagattgg atcgtcgacgtcggtcccggtcccggtgagcatggtgggcgggtgctctacagcggtgag gtggacggtctcgctcacgtccccgaatccgtgactcgccgataccttttcggaaccccc gagagttaccccgaccccggaccgccggacaggtggatcgaactcgccggcatcacgatg cacaacctgcgggatctgaccgtgcgaatcccgctcggggtgctcaccgcggtcacgggt gtgtcgggatcaggtaaatccacactcgtgagccgtgtgctcaccgacgtcgtcgcccag cacgtcggcctcgacagcgaaccccgcaccgacaccgggggagacgaagccgacgactcc acggtcgtcctggccgaggagcgcgagaaggataccgagccgacggtagtggccgcccac gggctgggacacatcaaccggctggtgcgcgtggaccagaccccgatcgggcggacgccg cgctcgaatctcgcgacctacaccggtctcttcgatgtgatccggaaactcttcgccgca caccccgttgcccgtgaacggggatacagtccgggccgattctcattcaatgtcagtggt ggccgttgcgaggaatgcgagggcgccggttcgatcaccatcggtatgctgtttctgccc gaggcgtccgcgccgtgcccggcgtgcgcaggcgcacgatacaacgcggagaccctcgag gtcctcgtcgacggccggacgatcgccgacgtcctcgcgatgacggtcgacgacgcccgc gctttcctgagtcacgtcccggcagcggcgaaaagccttgacatgctggtcgaagtcggt ctcggatatctgcgactcggccaatcggccaccaccctgtccggcggggaggcgcagcgc gtcaagctcgccagcgaactgcagcgcatccgatccgggcacacgctctacgtactcgac gaaccgaccaccggattgaaccccgccgacgtcgatcgcctcatggtggtgttgcgacgg ctcgtcgcggcgggaaataccgtcgtcctcgtcgaacacgacatgccggtcattgcctcg gcggactggatgatcgatctcgggcccggcgggggagacagcggcggccggatcatcgcc tcggggccaccgacggtcgttgcggagacggccggctccgccaccgccgcctatctcgcc cgacatctcgcccggtga

Rhodococcus opacus PD630: Pd630_LPD05054 Help Entry Pd630_LPD05054    CDS       T03071                                  Definition (GenBank) UvrABC system protein A   KO K03701   excinuclease ABC subunit A Organism roa  Rhodococcus opacus PD630 Pathway roa03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:roa00001]  09120 Genetic Information Processing   09124 Replication and repair    03420 Nucleotide excision repair     Pd630_LPD05054  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:roa03400]     Pd630_LPD05054 DNA repair and recombination proteins [BR:roa03400]  Prokaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     GGR (global genome repair) factors      Pd630_LPD05054   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      Supressor       Pd630_LPD05054 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  UvrA_inter UvrA_DNA-bind ABC_tran AAA_16 AAA_29 SMC_N AAA_21 RsgA_GTPase AAA_25 APS_kinase NACHT DnaJ_CXXCXGXG ScfRs DNA_ligase_ZBD Viral_helicase1 cobW NTPase_1 Motif Other DBs NCBI-ProteinID:  AHK32262 UniProt:  W8H2I3 LinkDB All DBs Position complement(5238333..5241311) Genome map AA seq 992 aa AA seqDB search MRGAREHNLRGVDLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFL GQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLYARAGTAHCPVCGE QIARQTPQQIVDQVLDMEEGTRFQVLAPVVRTRKGEFVDLFDQLNMQGYSRVRVDGVVHP LSDPPKLKKQEKHDIEVVVDRLTVKASSKQRLTDSVETALRLAEGIVVLDFVDREENAAD RERRFSEKLACPNGHALSIDDLEPRSFSFNSPYGACPECTGLGIRKEVDPDLVVPDPELS LEDGAIAPWSMGQSSEYFGRLLSGLGDILGFDMKTPWNKLPAKARRAILEGSEEQVHVRY KNRYGRTRSYYAEFEGVMPFLHRRLEQTESDQMKERYDGYMRDTPCPACGGARLRPEILS VTIANEKFGMKSIAEVCELSISDCADFLNSLTLGSREEAIAGQVLKEVQARLGFLLDVGL EYLSLARAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLR DLGNTLIVVEHDEDTIRTSDWVVDIGPLAGEHGGKVVHSGPYEDLLDCEESLTGAYLSGR SHIEIPAIRRPVDRKRQVTVIGAREHNLGGIDVSFPLGVLTSVTGVSGSGKSTLVNDILA TVMANKLNGARQVPGRHTRINGLDQLDKLVQVDQSPIGRTPRSNAATYTGVFDKIRTLFA ATTESKVRGYQPGRFSFNVKGGRCEACSGDGTLKIEMNFLPDVYVPCEVCHGARYNRETL EVHYKGKTIAEVLDMPIEEAAEFFEPITSIHRYLKTLVEVGLGYVRLGQPAPTLSGGEAQ RVKLAAELQKRSTGRTVYILDEPTTGLHFEDIRKLLGVVNGLVDKGNTVIVIEHNLDVIK TSDWVVDMGPEGGSGGGTVVAQGTPEEVAQVPESYTGRFLENVLEVPAPPAAAKSKAAKS TSTRKPASTKKTAAAATATPRKRAPKKAAAVS NT seq 2979 nt NT seq  +upstreamnt  +downstreamnt gtgcggggtgcccgtgagcacaatctgcgaggggtcgatctcgatctgccccgcgacagc ctgatcgtgttcaccgggctgtcgggctcgggcaagtcgagtctggcgttcgacacgatc ttcgccgagggccagcgacgctatgtcgagtcgctgtcggcgtacgcgcgccagttcctc ggtcagatggacaagcccgacgtcgacttcatcgaaggtctgtcgccggcggtgtccatc gaccagaagtcgaccaaccgcaacccgcggtcgacggtcggcaccatcacggaggtctac gactatctccgtctgctgtacgcccgggcgggcaccgcccactgcccggtgtgtggcgag cagatcgcgcggcagacgccgcagcagatcgtcgaccaggtcctcgacatggaggaaggc acccgcttccaggtgctcgctcccgtcgtgcgtacccgcaagggcgaattcgtcgacctg ttcgaccagctcaacatgcagggctactcacgtgtgcgggtcgacggcgtcgtgcatccg ctctccgatccgccgaagctcaagaagcaggagaagcacgacatcgaggtcgtcgtcgac cgcctcaccgtcaaggccagctccaagcagcggctcaccgactccgtcgagaccgcgctg cggttggcggagggcatcgtcgtcctcgacttcgtcgaccgcgaagagaacgccgcggac cgggaacgccgattctcggagaagctggcatgcccgaacggccacgctctctccatcgac gacctcgaaccccggtcgttctcgttcaactccccctacggcgcctgccccgagtgcacg ggcctcggaatccgcaaggaggtcgaccccgacctcgtggtccccgaccccgagctgtcc ctcgaggacggcgccatcgcgccgtggtcgatggggcagagttccgaatacttcggccgc ctgctgtccgggctcggcgacattctcggcttcgacatgaagacgccgtggaacaagctg cccgcgaaggcacgccgggcgatcctcgagggcagcgaggagcaggtccacgtccggtac aagaaccggtacgggcgtacccgttcctactacgccgagttcgagggcgtcatgcccttc ctgcaccgccgcctcgagcagaccgagtcggaccagatgaaggaacgctacgacggctac atgcgagacaccccgtgtccagcgtgtggcggtgcgcgcctgcgccccgagatcctgtcg gtcacgatcgcgaacgagaagttcggcatgaagtcgatcgccgaggtctgtgaactgtcg atctccgattgcgccgacttcctgaacagcctcacgctgggcagtcgcgaggaggccatc gcaggtcaggtgctcaaggaagttcaggctcgtctcggcttccttctcgacgtcggcctc gaatacctgtcgctcgctcgcgccgccgggacgctgtccggcggtgaggcgcagcgtatc cgcctcgccacccagatcggctcgggcctggtgggcgtcctgtacgtcctcgacgagccg tcgatcggtctgcatcagcgcgacaaccggcgtctcatcgagaccctgacgcgcctgcgc gacctcgggaacacgctcatcgtggtcgaacacgacgaagacaccatccgcacgtccgac tgggtcgtcgacatcgggccgctcgccggcgaacacggaggcaaggtcgtccacagcggg ccgtacgaggacctgctcgactgcgaggaatccctcaccggggcctacctgtcgggccgc agtcacatcgagattccggccatccgccgaccggtcgatcgcaagcggcaggtcacggtc atcggtgcgcgcgaacacaacctcgggggcatcgatgtcagcttcccactgggcgtgctc acgtcggtcaccggtgtgtccgggtccggtaagtcgacgctcgtcaacgacatcctcgcg acggtgatggcgaacaagctcaacggcgcccgccaggtgccgggcaggcacacccgcatc aacgggctcgaccagctggacaagctcgtgcaggtcgaccagtcgccgatcggccgcacc ccgcggtccaacgcggccacctataccggggtgttcgacaagatccgcaccctgttcgcc gccaccaccgagtcgaaggtgcgcggctaccagccgggccggttctcgttcaacgtcaag ggcggccggtgcgaggcctgctccggcgacggcacgttgaagatcgagatgaacttcctt cccgacgtgtacgtgccgtgcgaggtctgccacggcgcccggtacaaccgcgagactctc gaggtccactacaagggcaagaccatcgccgaggtgctggacatgccgatcgaggaggcc gcggagttcttcgagcccatcacctcgatccaccgctacctcaagaccctggtcgaggtc ggtctcgggtacgtgcggctcggtcagcccgcaccgacgctgtccggtggtgaggcgcag cgcgtgaagctcgccgccgagctgcagaaacggtcgacgggccgcacggtgtacatcctc gacgagcccacgacgggtctgcacttcgaggacatccgcaagttgctcggggtcgtcaac gggttggtcgacaagggcaacacggtgatcgtgatcgagcacaacctcgacgtgatcaag acctccgactgggtggtcgacatggggcccgagggcgggtccggcggcggcaccgtcgtc gcgcagggcaccccggaggaggtggcgcaggttccggagagttacacgggtcggttcctg gaaaacgtcctcgaggtgccggcgcctcccgctgcggcgaagtcgaaggcggccaagtcg acgtcgacgcggaagcccgcttcgacgaagaagactgccgcggccgccacggcgacaccg cgcaagcgggcgccgaagaaggccgcagcagtcagctga

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