KEGG   Rhodococcus opacus PD630: Pd630_LPD05062
Entry
Pd630_LPD05062    CDS       T03071                                 

Definition
(GenBank) UvrABC system protein B
  KO
K03702  excinuclease ABC subunit B
Organism
roa  Rhodococcus opacus PD630
Pathway
roa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:roa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Pd630_LPD05062
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD05062
DNA repair and recombination proteins [BR:roa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Pd630_LPD05062
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Pd630_LPD05062
SSDB
Motif
Pfam: UvrB_inter UvrB Helicase_C ResIII UVR DEAD AAA_19 Helicase_RecD AAA_5 UPF0730 Apolipoprotein AAA_22 DUF87 AAA_7 AAA_16 AIG1
Other DBs
NCBI-ProteinID: AHK32270
LinkDB
Position
complement(5247685..5249823)
AA seq 712 aa
MVAHSEFRPIGDIERSEARFEVVSDHKPAGDQPTAIADLERRINAGEKDVVLLGATGTGK
SATTAWLIEKVQRPTLVMAPNKTLAAQLANELRDMLPNNSVEYFVSYYDYYQPEAYIAQT
DTYIEKDSSINDDVERLRHSATSSLLSRRDVVVVASVSCIYGLGTPQSYLDRSVQLEVGV
EVPRDALLRLLVDVQYTRNDLAFTRGSFRVRGDTVEIIPSYEELAVRIEFFGDEIEALYY
LHPLTGDVVRKVDSVRIFPATHYVAGPERMERAVKDIEAELEERLADLENKGKLLEAQRL
RMRTQYDLEMIKQVGFCSGIENYSRHIDGRGPGTAPATLIDYFPEDFLLVIDESHVTVPQ
IGAMYEGDMSRKRNLVEFGFRLPSATDNRPLTWEEFTQRIGQTVYLSATPGKYELGQAGG
EFVEQVIRPTGLVDPQVVVKPTKGQIDDLVHEIRERADRDERVLVTTLTKKMAEDLTDYL
LELGIRVRYLHSDIDTLRRVELLRQLRLGEYDVLVGINLLREGLDLPEVSLVAILDADKE
GFLRSSTSLIQTIGRAARNVSGQVHMYADKITDSMQHAIEETERRREKQIAYNEKMGVDP
QPLRKKIADILDQVYEEAEDTASGVDVGGSGRNATRGRRAQGEAGRSVSAGVYEGRDTKS
MPRAELADLVKELTDQMMNAARDLQFELAGRLRDEIADLKKELRGMDAAGLK
NT seq 2139 nt   +upstreamnt  +downstreamnt
gtggtggcacattccgagttccgtcccatcggggatatcgagcggtcggaagcgcggttc
gaggtggtcagcgaccacaagccggccggcgaccagcccaccgcgatcgccgatctggaa
cgccgtatcaacgccggtgagaaggacgtggtcctgctcggcgccaccggtacgggcaag
tccgcgaccacggcgtggctgatcgagaaggtgcagcggcccaccctggtgatggcgccg
aacaagacgctcgccgcgcagttggccaacgagctgcgcgacatgctgcccaacaactcg
gtggagtacttcgtctcgtactacgactactaccagcccgaggcgtacatcgcgcagacc
gacacctacatcgagaaggactcgtcgatcaacgacgacgtcgagcgactgcgccactcg
gcgacgtcgagcctgctctcgcggcgggacgtggtcgtggtggcgtccgtgtcgtgcatc
tacggcctcggcaccccgcagtcgtacctcgaccggtcggtgcagctcgaggtcggtgtg
gaggttccgcgcgacgctctgctgcggctgctggtcgacgtgcagtacacccgcaacgat
ctggcgttcacccgcggatccttccgggtgcgcggcgacaccgtcgagatcattccctcg
tacgaggagctggcggtccggatcgagttcttcggcgacgagatcgaggcgctgtactac
ctgcatcccctcaccggggacgtggtgcggaaggtcgactcggtgcgcattttcccggcc
acgcactacgtcgcgggtcccgagcggatggaacgcgccgtcaaggacatcgaagccgaa
ctcgaggaacggctcgccgacctcgagaacaagggcaagctgctcgaggcgcagcgtctc
cggatgcgcacccagtacgacctcgagatgatcaagcaggtcgggttctgctccggcatc
gagaactactcgcgtcacatcgacggtcgtggaccgggcactgcgcccgccacgctcatc
gactacttcccggaagacttcctcctcgtcatcgacgagtcccacgtgacggtcccgcag
atcggcgcgatgtacgagggcgacatgtcgcgcaagcggaacctcgtcgagttcgggttc
cggttgccgtccgccaccgacaaccgtccgctgacgtgggaggagttcacccagcgcatc
gggcagacggtgtatctgtcggccacacccggcaagtacgagctggggcaggccggcggg
gagttcgtcgagcaggtcatccgccccaccggtctcgtcgacccccaggtggtcgtcaaa
ccgaccaaggggcagatcgacgacctcgtgcacgagatccgcgaacgcgcggaccgggac
gagcgcgtcctcgtcaccacgttgacgaagaagatggcggaagatctcaccgactacctc
ctcgagctcggtatccgggtgcggtacctgcactcggacatcgacacgctgcgacgggtc
gagctgctccggcagctccggctgggggagtacgacgttctggtgggtatcaacctgctg
cgtgagggcctcgaccttcccgaggtgtcgttggtcgccatcctcgacgccgacaaggag
gggttcctccggagctcgaccagcctcatccagacgatcggccgtgcggctcgtaacgtg
tccggccaggtccacatgtacgccgacaagatcaccgactcgatgcagcacgcgatcgag
gagaccgagcggcggcgtgagaagcagatcgcctacaacgagaagatgggcgtcgatccg
caaccgctgcggaagaagatcgcggacatcctcgaccaggtctacgaggaagccgaggac
acggccagcggagtcgacgtcggcggttccggacgcaacgccacccgcgggcgccgtgcg
cagggcgaggccgggcgctcggtcagcgccggggtgtacgagggtcgtgacacgaagtcg
atgcccagggcggagttggcggacctggtcaaggaattgactgatcagatgatgaacgcc
gcccgtgatctgcagttcgaactcgccggacgactgcgcgacgagatcgccgacctgaag
aaggaactgcgcggaatggacgccgcgggcctgaaatag

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