KEGG   Rhodococcus opacus PD630: Pd630_LPD05163
Entry
Pd630_LPD05163    CDS       T03071                                 

Definition
(GenBank) DNA polymerase III subunit alpha
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
roa  Rhodococcus opacus PD630
Pathway
roa03030  DNA replication
roa03430  Mismatch repair
roa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:roa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Pd630_LPD05163
   03430 Mismatch repair
    Pd630_LPD05163
   03440 Homologous recombination
    Pd630_LPD05163
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:roa03032]
    Pd630_LPD05163
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD05163
Enzymes [BR:roa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Pd630_LPD05163
DNA replication proteins [BR:roa03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Pd630_LPD05163
DNA repair and recombination proteins [BR:roa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Pd630_LPD05163
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon
Other DBs
NCBI-ProteinID: AHK32369
UniProt: W8HBP5
LinkDB
Position
complement(5345474..5349010)
AA seq 1178 aa
MADSFVHLHNHTEYSMLDGAAKVGPLFEEAERLGMSAVGMTDHGNMYGASEFYNVAKKQG
IKPIIGIEAYIAPESRFNTKRVLWGDRSQKSDDVSGSGAYTHMTMVAENATGLRNLFKLS
SLASIEGQLGKWARMDEELIATHHEGIIATTGCPSGEIQTRLRLGHDREALEAAAKWQEI
WGKDNFFLELMDHGLSIERRVREGLLEISKKLEIPPLATNDCHYVTKEAAENHEALLCIQ
TGKTLSDPTRFKFDGDGYYLKPAAEMRALWDDQVPGACDNTLLIAERVQSYDDVWAHHDR
MPIFPVPEGETQGTWLRKEVMRGLDRRFPDGPPEEYLARADYEIGVILEMGFPAYFLVVG
DLINHAREVGIRVGPGRGSAAGSLVAYAMGITNIDPIPHGLLFERFLNPERVSMPDIDID
FDDRRRGEMVRYATDKWGSDRVAQVITFGTIKTKAAIKDSARVQFGQPGFAIADQITKAL
PPPIMAKDISVSGITDPNHERYKEAVEVRALIDSNPDVAKIYQTAKGLEGLIRNAGVHAC
AVIMSSEPLMDAIPVWRRAQDGAIITGWDYPSCEAIGLLKMDFLGLRNLTVIGDAIDNIK
ANRGIDLDLDTLALDDPATYELLSRGDTLGVFQLDGSAMRDLLRRMQPTGFEDIVAVLAL
YRPGPMGMNAHNDYADRKNGRQEVKPIHPELEEPLKEILADTYGLIVYQEQIMQIAQKVA
GYSLGQADILRRAMGKKKLSVLEEAYAGFREGMLANEFSEPAIKALWDTILPFAGYAFNK
SHAAGYGLVSFWTGYLKANYPAEYMAGLLTSVGDDKDKAAIYLADCRKMGITVLPPDVNE
SEVNFASVGEDIRFGMGAVRNVGANVVGSIIKARKEKSKFVDFSDYLNKIDAAACSKKVT
ESLIKAGGFDSLGHPRKGLMLVHADAIDAVMGTKKAEAIGQFDLFGGDDADESISSVFNV
KIPEEEWDSKHRLALEREMLGLYVSGHPLNGVEHVLSAQSDTAIPTILEGDIKDGTQVTV
GGILASVNRRINKNGLTWASAQLEDLTGGIEVLFFPQAYSVYGMDVTDDSVVLVKARVSI
RDDRISLIANDLAVPDLSAVGVAKPLAVSLPLRQCTKDKIGALRQVLTRHPGTSDVHVRL
IGGTEVTLWKVDDVLRVEPSSALMGDLKALLGPSCLSV
NT seq 3537 nt   +upstreamnt  +downstreamnt
gtggctgactcgttcgtacatctgcacaatcacaccgagtactcgatgctcgacggtgcg
gccaaggtcggccccctgttcgaagaggccgagcgactggggatgtcggcggtcggcatg
accgaccacggcaacatgtacggcgccagcgagttctacaacgtcgcgaagaagcagggc
atcaagccgatcatcggcatcgaggcgtacatcgcgcccgagtcccgcttcaacaccaag
cgcgtgctgtggggcgaccgcagccagaagtccgacgacgtctccggtagcggtgcgtac
acccacatgacgatggtcgcggagaacgcgaccggtctgcggaacctgttcaagctgtcc
tcgctcgcgtcgatcgagggtcagctcggcaagtgggcgcggatggacgaagagctcatc
gccacccaccacgagggcatcatcgcgaccacgggctgcccgtccggtgagatccagacc
cggctgcgactcggccacgaccgagaggcgctcgaggccgccgccaagtggcaggagatc
tggggcaaggacaacttcttcctcgagctgatggaccacggactctcgatcgagcgacgg
gtgcgcgagggcctgctcgagatcagcaagaagctcgagattccgccgctcgccaccaac
gactgccactacgtcaccaaggaagccgcggagaaccacgaggcgcttctctgcatccag
accggtaagacgctgtccgaccccacccggttcaagttcgacggcgacggctactacctg
aagccggccgcggagatgcgggcgctgtgggacgaccaggtgcccggcgcgtgcgacaac
acactgctgatcgccgagcgggtccagtcgtacgacgacgtctgggcgcaccacgaccgg
atgccgatcttcccggtccccgagggtgagacgcagggcacctggttgcgcaaggaggtc
atgcgcggactggatcgccggttccccgacggaccccccgaggagtacctcgcccgcgcc
gactacgagatcggcgtcatcctcgaaatgggtttccccgcctacttcctcgtcgtcggt
gacctcatcaaccacgcccgggaggtcggcatccgcgtcggccccggccgaggctcggcg
gccggttcgctcgtcgcctacgcgatgggcatcaccaacatcgaccccatcccgcacggt
ctgctgttcgagcggttcctgaaccccgaacgcgtctccatgcccgatatcgatatcgac
ttcgacgatcgccgtcgcggcgagatggtgcgctacgcgacggacaagtggggcagcgac
cgcgtcgcccaggtcatcacgttcggcaccatcaagacgaaggcggccatcaaggactcc
gcccgagtccagttcggccagcccggtttcgcgatcgccgaccagatcacgaaggcgctg
ccgccgccgatcatggccaaggacatctcggtgtccggcatcacggacccgaaccacgag
cgctacaaggaagcggtggaggttcgcgccctcatcgactccaacccggacgtcgcgaag
atctaccagacggccaaggggctcgagggcctgatccgtaacgccggcgttcacgcctgc
gcggtgatcatgtcgtccgaaccgctgatggacgcgattcccgtgtggaggcgcgcccag
gacggtgccatcatcaccggctgggactacccgtcgtgcgaggccatcggcctgctgaag
atggacttcctcggactgcggaacctcaccgtcatcggtgacgccatcgacaacatcaag
gcgaaccgggggatcgacctcgatctcgacaccctcgcgctcgacgacccggccacgtac
gaactgctctcccgcggagacactctcggcgtgttccagctcgacggcagcgcgatgcgc
gacctgctgcgccgcatgcagcccaccggcttcgaagacatcgtcgcggtgctcgcgctg
taccggcccggtccgatgggcatgaacgcgcacaacgactacgccgaccgcaagaacggg
cggcaagaggtcaaacccatccacccggagctcgaggagcccctgaaggagatcctggcc
gacacgtacggcctgatcgtctaccaggagcagatcatgcagatcgctcagaaggtggcc
gggtattcgctcggacaggccgacattctccgccgagccatgggtaagaagaagctctcg
gtgctggaggaggcgtatgccggcttccgcgagggcatgctcgccaacgaattctccgag
cccgccatcaaggcgctgtgggacaccatcctcccgttcgccgggtacgcgttcaacaag
tcgcacgcggccgggtacggcctggtgtcgttctggaccgggtatctcaaggccaactac
ccggccgagtacatggccggtctgctcacctcggtcggtgacgacaaggacaaggccgcc
atctacctcgcggactgccgcaagatgggtatcaccgtgctgccgccggacgtcaacgaa
tcggaggtcaacttcgcctccgtcggtgaggacatccggttcggcatgggcgccgtccgc
aacgtcggcgccaacgtcgtgggctcgatcatcaaggcgcgcaaggagaagtccaagttc
gtcgacttctccgactacctcaacaagatcgacgccgccgcctgctccaagaaggtcacc
gaatcgctgatcaaggcaggcgggttcgactcgctgggccatccgcgcaagggactcatg
ctcgtccacgccgacgccatcgacgcggtgatgggcaccaagaaggcggaggcgatcgga
cagttcgacctcttcggcggcgacgacgccgacgagtcgatctcctcggtgttcaacgtg
aagatccccgaggaagagtgggactcgaagcaccggttggcgctggaacgggaaatgctg
ggactgtacgtgtccgggcacccgctcaacggcgtcgaacacgtgctgtcggcgcagtcc
gacaccgcgataccgaccatcctcgaaggcgacatcaaggacggcacccaggtcaccgtc
ggcgggatcctcgcgtcggtgaaccggaggatcaacaagaacggtctcacctgggcgtcc
gcgcagctcgaggatctgaccggtggtatcgaggtgctgttcttcccgcaggcctactcg
gtctacgggatggatgtcacggacgactccgtcgtgctcgtcaaggcgcgagtgtcgatt
cgtgacgatcggatctcactcatcgccaacgaccttgcggtgccggatctctcggcagtg
ggggtcgcgaagccgctggcggtcagtctgccgctgcgtcagtgcaccaaggacaagatc
ggcgcgttgcgtcaggtgctcacgcgccatccgggcacgtcggacgtccacgtgcggttg
atcggcggcaccgaggtcaccttgtggaaggtcgacgacgtgctccgggtggaaccgtcg
tcggcgttgatgggcgatctcaaggcgctgctcggaccgagctgcctgtccgtgtga

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