KEGG   Rhodococcus opacus PD630: Pd630_LPD06132
Entry
Pd630_LPD06132    CDS       T03071                                 

Definition
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
roa  Rhodococcus opacus PD630
Pathway
roa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:roa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Pd630_LPD06132
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:roa03021]
    Pd630_LPD06132
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD06132
Enzymes [BR:roa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Pd630_LPD06132
Transcription machinery [BR:roa03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Pd630_LPD06132
DNA repair and recombination proteins [BR:roa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Pd630_LPD06132
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_45 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AHK33323
LinkDB
Position
complement(6358907..6362476)
AA seq 1189 aa
MTSEIRSRYSGGRNSKSGPREVLEGRILAVSSQTKAVSGIPGAPKRVSFAKIREPLEVPG
LLDVQTDSFEWLIGAQSWRERAAARGDSAISGGLEDILAELSPIEDFSGSMSLSFSDPRF
DEVKASTDECKDKDMTYAAPLFVTAEFINNNTGEIKSQTVFMGDFPMMTDKGTFIINGTE
RVVVSQLVRSPGVYFDHSVDKGTEKDLHSVKVIPGRGAWLEFDVDKRDTVGVRIDRKRRQ
PVTVLLKALGWTTEQITERFGFSEILMATLEKDNTAGTDEALLDIYRKLRPGEPPTKESA
QTLLENLFFKDKRYDLARVGRYKINKKLGLNLGQPIVASTLTEEDIVATIEYLVRLHAGD
TEMTAPGGSAVPVEVDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAI
TPQTLINIRPVVAAIKEFFGTSQLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEV
RDVHPSHYGRMCPIETPEGPNIGLIGSLSVYARVNPFGFIETPYRKVENGQVTDQVDYLT
ADEEDRHVVAQANSALDANGHFTDDRILVRRKGGEVEFVSSAEIDYMDVSPRQMVSVATA
MIPFLEHDDANRALMGANMQRQAVPLVRSEAPLVGTGMELRAAVDAGDVIVTEKTGVVEE
VSADYVTVMADDGSRKTYRMRKFARSNQGTCANQRPIVDEGQRVEFGQVLADGPCTENGE
MALGKNLLVAIMPWEGHNYEDAIILSQRLVEEDVLTSIHIEEHEIDARDTKLGAEEITRD
IPNVSDEVLADLDERGIIRIGAEVRDGDVLVGKVTPKGETELTPEERLLRAIFGEKAREV
RDTSLKVPHGETGKVIGIRVFSRDDDDDLPPGVNELVRVYVAQKRKIQDGDKLAGRHGNK
GVIGKILPQEDMPFLPDGTPVDIILNTHGVPRRMNIGQILETHLGWIGKTGWNVQIAGDG
SRPDWAEQLPEEMLSAPADSNIATPVFDGAKEDELTGLLGSTLPNRDGEVMVASDGKATL
FDGRSGEPFPYPVSVGYMYIIKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGE
MECWAMQAYGAAYTLQELLTIKSDDVVGRVKVYEAIVKGENIPEPGIPESFKVLLKELQS
LCLNVEVLSSDGAAIAMADGDDEDLERAAANLGINLSRNEAATVDDLAN
NT seq 3570 nt   +upstreamnt  +downstreamnt
gtgaccagcgaaattcgaagcagatacagcggcggtcgcaacagcaagagcggcccgcgt
gaggtgctggaaggacgcatcttggcagtctctagccagaccaaggcagtttccggaatc
cccggagccccgaagagggtttcgttcgcaaagattcgcgaacccctcgaagttcccggg
cttcttgatgtacaaaccgattcgttcgagtggttgatcggtgcgcagagctggcgcgaa
cgcgccgccgctcgtggcgacagcgcaatctccggcggtctcgaggacattctcgcggag
ctttccccgatcgaggatttctcgggctcgatgtctctgtccttctcggacccgcgcttc
gacgaggtgaaggcctcgacggacgagtgcaaagacaaagacatgacctacgcggcgccg
ttgttcgtcaccgcggagttcatcaacaacaacaccggtgagatcaagagccagacggtc
ttcatgggcgacttcccgatgatgaccgacaagggcacgttcatcatcaacggcaccgag
cgtgtcgtggtctcgcagctggtgcgttcccccggcgtctacttcgaccactccgtcgac
aagggcaccgagaaggacctgcacagcgtcaaggtcatcccgggccgtggtgcatggctc
gagttcgacgtggacaagcgcgacacggtcggcgtccgcatcgaccgcaagcgccgccag
cccgtcaccgtgctgctgaaggccctcggctggaccaccgagcagatcaccgagcgcttc
ggcttctcggagatcctcatggcgacgctcgagaaggacaacaccgccggcaccgacgag
gcgctgctcgacatctaccgcaagctgcgtccgggcgagccgccgaccaaggagagtgcg
cagacgctcctggagaacctgttcttcaaggacaagcgctacgacctggctcgcgtgggt
cgctacaagatcaacaagaagctgggcctgaacctcggacagccgatcgtcgcgtcgacc
ctcaccgaggaagacatcgtcgccaccatcgagtacctggtgcgcctgcacgccggtgac
accgagatgaccgcccccggcggcagtgcggtgcccgtcgaggtcgacgacatcgaccac
ttcggtaaccgtcgtctgcgcacggtcggcgagctcatccagaaccagatccgcgtgggc
ctgtcccgcatggagcgcgtggttcgtgagcgcatgacgacccaggatgtcgaggcgatc
acgccgcagacgctgatcaacatccggcccgtcgtggctgcgatcaaggagttcttcgga
acctcccagctgtcgcagttcatggaccagaacaacccgctgtcggggctgacgcacaag
cgtcgtctgtccgccctcggcccgggtggtctgtcccgtgagcgcgccggcctcgaggtg
cgagacgttcacccgtcgcactacggccgcatgtgcccgatcgagacccctgagggtccg
aacatcggtctgatcggttcgctgtcggtgtacgcgcgggtcaacccgttcggcttcatc
gagacgccgtaccgcaaggtcgagaacggccaggtcaccgaccaggtcgactacctgacc
gcggacgaagaggaccgccacgtcgtcgcccaggccaactcggccctcgacgccaacggt
cacttcacggacgatcgcattctggtccgtcgtaagggtggcgaggtcgaattcgtctcg
tccgccgagatcgactacatggacgtctcgccgcggcagatggtgtccgtcgcgaccgcg
atgattccgttcctcgagcacgacgacgccaaccgtgccctgatgggtgcgaacatgcag
cgtcaggcggtgcccctcgttcgcagcgaggctccgctggtcggtaccggcatggaactg
cgtgccgccgtcgacgcgggcgacgtcatcgtcaccgagaagaccggtgtcgtggaagag
gtctccgccgactacgtcacggtcatggccgacgacggaagccgcaagacctaccggatg
cgcaagttcgcgcgttcgaaccagggcacctgcgccaaccagcgtccgatcgtggacgag
ggacagcgtgtcgagttcggacaggtcctcgccgacggtccctgcaccgagaacggtgag
atggcgctgggcaagaacctgctcgtcgcgatcatgccgtgggaaggccacaactacgag
gacgcgatcattctgtcgcagcgcctcgtggaagaggacgtcctgacctcgatccacatc
gaggagcacgagatcgatgcccgcgacaccaagctcggtgccgaggagatcactcgcgac
atcccgaacgtctccgacgaggtcctcgccgacctcgacgagcgcggcatcatccgtatc
ggtgccgaggttcgtgacggcgacgtgctggtcggaaaggtcacgccgaagggcgagacc
gagctgacccccgaggagcgcctgctgcgcgccatcttcggtgagaaggctcgtgaggtt
cgcgacacgtcgctgaaggtcccccacggtgagaccggcaaggtcatcggcatccgcgtg
ttctcgcgcgacgacgacgacgatctgccccccggtgtcaacgagctggtccgcgtctac
gtggcacagaagcgcaagatccaggacggcgacaagctcgccggccgccacggcaacaag
ggcgtcatcggcaagatcctcccgcaggaggacatgccgttcctgcccgacggcactccg
gtcgacatcattctgaacacccacggtgttccgcgtcgtatgaacatcggtcagatcttg
gagacccacctcgggtggatcggcaagaccggctggaacgttcagatcgccggcgacggc
tcccgtcccgattgggcggagcagctgccggaggagatgctgtctgcacctgccgactcc
aacatcgccaccccggtgttcgacggcgccaaggaagacgagctcaccggtctcctcggt
tcgacgctgccgaaccgcgacggcgaggtcatggtcgcgtccgacggaaaggccacgttg
ttcgacggccgttccggcgagccgttcccgtacccggtgtcggtcggctacatgtacatc
atcaagctgcaccacctggtcgacgacaagatccacgctcgttcgaccggtccgtactcg
atgatcacccagcagccgctcggcggtaaggcccagttcggtggccagcgcttcggtgag
atggagtgctgggcgatgcaggcctacggcgcggcatacacgctgcaggagctgctcacc
atcaagtcggacgacgtggtgggtcgagtcaaggtgtacgaggccatcgtcaagggcgag
aacatccccgagccgggcatccccgagtcgttcaaggtgctcctgaaggagctccagtcg
ctctgcctcaacgtggaggtgctgtcctcggacggcgcggccatcgcgatggccgacggt
gacgacgaggacctggagcgggccgcagcgaacctgggcatcaacttgtcccggaacgaa
gcggcgacggtcgacgacctcgcgaactag

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