KEGG   Rhodococcus opacus PD630: Pd630_LPD06521
Entry
Pd630_LPD06521    CDS       T03071                                 

Definition
(GenBank) putative bifunctional transcriptional activator/DNA repair enzyme AlkA
  KO
K01247  DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
Organism
roa  Rhodococcus opacus PD630
Pathway
roa03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:roa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Pd630_LPD06521
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD06521
Enzymes [BR:roa01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.21  DNA-3-methyladenine glycosylase II
     Pd630_LPD06521
DNA repair and recombination proteins [BR:roa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Pd630_LPD06521
SSDB
Motif
Pfam: AlkA_N HhH-GPD
Other DBs
NCBI-ProteinID: AHK33707
LinkDB
Position
complement(6751058..6751897)
AA seq 279 aa
MQLPYRGPFTHAPLWGALGAHTVSGLERHDPDGTHTRVVSGPHGPALVSVVVRPGYVEAH
LTPADPGDVEAVTAAVRRWLDLDADPLPIDTALSRHPQLAPLVALRPGLRRLGSVDGFET
AVLTVLGQQVSLAAARTFGSRLVSAYGRPVHDGFLAFPEPETLAALSPEQLRSTLGLTGA
RARTVLALAEAASDGLRLGADTDPAEFRAGLLALPGIGPWTTDYLTVRVLADPDAFTPDD
LVLKRALGVRTGRQAAELAESWRPWRAYALFHLWTDEAY
NT seq 840 nt   +upstreamnt  +downstreamnt
gtgcaactgccgtacaggggtccgttcacccatgcgccgttgtggggcgcgctcggcgcc
cacactgtgtccgggctcgagcgacacgaccccgacggaacccacacccgggtggtgagc
ggtccccacgggcccgcgctggtgtccgtcgtcgtacgtcccgggtacgtcgaggcgcac
ctgacaccggcggatccgggagacgtcgaggctgtgaccgccgctgtccggcgctggctc
gacctcgacgcggatccgctgccgatcgacaccgcgttgagccgtcacccgcaactggct
ccgctggtggcactacgtccgggtctgcggcgcctggggagcgtggacgggttcgagacg
gcggttctgaccgttctcggacaacaggtttcgctggcggcggcccggacgttcggcagc
aggctcgtgtccgcgtatggacggcccgtccatgacggattcctcgcgtttcccgaaccg
gagacgctggcggcgctctcacccgaacagttgcgctcgaccctcggtctcaccggcgcc
cgggccaggaccgtgctcgcgctggccgaggccgcgtccgacggtctgcgcctcggcgcg
gataccgaccccgccgagttccgggccggtctgctcgcgctgcccggcatcggtccgtgg
acgacggactatctgacggtgcgggtgctggccgacccggacgcgttcacacccgacgac
ctcgtcctcaaacgtgcgctgggggtcaggaccggcaggcaggcagcggaactcgccgag
tcgtggcgaccgtggcgggcctacgcgctgttccacctgtggacggacgaagcgtattag

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