KEGG   Rhodococcus opacus PD630: Pd630_LPD09135
Entry
Pd630_LPD09135    CDS       T03071                                 

Definition
(GenBank) Putative DNA ligase-like protein
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
roa  Rhodococcus opacus PD630
Pathway
roa03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:roa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Pd630_LPD09135
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD09135
Enzymes [BR:roa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Pd630_LPD09135
DNA repair and recombination proteins [BR:roa03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Pd630_LPD09135
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C DUF1233
Other DBs
NCBI-ProteinID: AHK35375
UniProt: W8HG66
LinkDB
Position
p1:115962..116930
AA seq 322 aa
MRLIAPMLATPGEPPEDMDGWAAEMKYDGCRVLAAAGGGQRPVLWTRNLNVVTSSYPEVT
EALAEVFGGHRRIVFDGEIVALSQGRPSFARLQRRMNTLRPTTTLRRQVPVTYLPFDVLT
ADGEDLMAAPYVDRRAALTDLGHDLRGAIQVLPHWEGIGSAVILDAARNSMMEGALFKRV
SSLYTPGQRSRLWRKVLLRNRSSAVVVGWVPGGRAERNMVGALVLGAYDEAGVLRYVGQV
GTGFSMAVRRQLKEKLALLERRTSPLGTDAAAAEEHGIVRWVEPVVVVDVAYREYLPGGL
RHPSFKGQRGDLDPGSITRDSL
NT seq 969 nt   +upstreamnt  +downstreamnt
atgcggctgattgcgccgatgctggccactccgggtgaaccaccggaggacatggacggc
tgggcggcggagatgaagtacgacggttgccgcgtcctcgccgcggccggcggcggtcag
cggccggtgttgtggacacgcaatctcaatgtcgtcacctcctcgtacccggaggtgacc
gaggcgctggccgaggtgttcggcggccaccgtcgcatcgtcttcgacggtgaaatcgtc
gccctttcccaaggccgtccgtcgttcgcccgcctacaacggcggatgaatactctgcgc
ccgaccacaacgctgcggcggcaggtgccggtcacgtatctgccgttcgacgtcctcacc
gctgacggtgaagatctgatggccgccccgtacgtggatcggcgcgccgccctcaccgat
cttggtcacgacctgcgcggggccattcaggtcctcccgcattgggagggcatcggcagc
gctgtcatcctcgatgcggcccgaaattccatgatggagggggcacttttcaagcgggtg
tcctcgctctacacgcccggtcagcgctcccggttgtggcggaaagtgttgttacgcaac
agaagttccgctgtggtggtcggctgggtcccgggagggcgtgctgagcgcaacatggtc
ggcgcccttgtcctcggcgcctacgacgaggcgggtgtcctgcgctacgtgggtcaagtc
gggaccggattttcgatggcggtgcgccgccagctgaaggagaagctggccctccttgaa
cgccgcaccagcccacttggcaccgatgctgcggccgcggaggagcacgggatcgtgcgc
tgggtcgaaccggtggttgtggtggacgtcgcgtatcgcgaatatctcccgggcgggctt
cggcatcccagcttcaagggacagcgcggagatctggatcctggttcgatcactcgggat
tcgctgtga

DBGET integrated database retrieval system