KEGG   Rhodococcus opacus PD630: Pd630_LPD11016
Entry
Pd630_LPD11016    CDS       T03071                                 

Definition
(GenBank) putative thermostable DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
roa  Rhodococcus opacus PD630
Pathway
roa03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:roa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Pd630_LPD11016
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:roa03400]
    Pd630_LPD11016
Enzymes [BR:roa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Pd630_LPD11016
DNA repair and recombination proteins [BR:roa03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Pd630_LPD11016
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AHK35591
LinkDB
Position
p3:12607..13563
AA seq 318 aa
MLAMAGTLPDTTAERPWSFEMKYDGCRILASVDGGHEPVLWTRNMNVVTPSYPEIGEALT
TAFGGRGRIVLDGELVALDQGKPSFGLLQRRMGVARATKPLQKRIPVTFLPFDVLALEGE
DLTKASYLDRRAQLAELDLIIQDVGGLPITVTPFWENQSSKIMLNAAKSAGMEGILAKRS
TSIYLPGQRSRAWIKHAIRTRSSVLVIGFVGSSRSVAALILGAYDTEGRLVQIGSVSSGL
TTSMRRQLRDEFRPLERPSSPLTDPSAAAETLPGVQWLDARLVVDVAYRAYSAGGLRHPS
LQGRRYDVDDRSVRVEDL
NT seq 957 nt   +upstreamnt  +downstreamnt
atgctggccatggccggcacactcccggacaccacagcggaacggccgtggagtttcgag
atgaagtacgacgggtgccgaatcctggcctcggtcgacggcggccacgaaccggtgctg
tggacgcgcaacatgaacgtggtgacaccctcatacccggagatcggtgaggcattgacg
accgcgttcggcggccgcggccgcatcgttctcgacggtgaactggtagctctcgatcag
ggcaagccatccttcgggctacttcaaagaaggatgggggtagcccgggcgacgaagccg
ctgcagaaacgaattcctgtaacattcttaccctttgacgtcttggcgctcgaaggagag
gatctcacgaaggcgtcgtacttggatcggcgggcgcaactggccgagctggatttgatc
atccaggacgtcggcggtctgccgatcaccgtcaccccattctgggagaatcagagcagc
aagatcatgctgaatgccgccaagagtgctggtatggagggaattttggccaaaagatcg
acctcgatctaccttccgggtcagcggagccgagcctggatcaaacacgcaatccgcact
cgcagttcggttttggtgatcggcttcgtcggctcgagccgatcggtcgcggcactgatc
ctcggagcatacgataccgaagggcgtttggtccagatcggttctgtcagttccggactc
accacgtcgatgcgccgccagctccgggacgagttccggccactcgaacgccccagcagt
cctctcacggacccttcagcggccgcagaaacccttcccggggttcagtggctggacgct
cggctggtcgtggacgtggcctatcgcgcgtactcggcgggtgggctccgacacccgagt
ctgcaaggccggcgatacgacgtcgacgatcgatcggttcgggtggaggacctgtag

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